Calcium in PDB 2fcw: Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap).

The structure of Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap)., PDB code: 2fcw was solved by N.Beglova, C.Fisher, S.C.Blacklow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.26
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	118.523, 30.019, 58.143, 90.00, 96.57, 90.00
R / Rfree (%)	15.2 / 20.1

The structure of Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap). also contains other interesting chemical elements:

Sodium

(Na)

4 atoms

The binding sites of Calcium atom in the Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap). (pdb code 2fcw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap)., PDB code: 2fcw:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap). within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca3001 b:11.8 occ:1.00 O B:ASP110 2.3 14.3 1.0 O B:PHE105 2.3 13.9 1.0 OD1 B:ASP108 2.3 13.6 1.0 OD2 B:ASP112 2.3 12.5 1.0 OD2 B:ASP118 2.3 12.8 1.0 OE2 B:GLU119 2.3 11.9 1.0 CG B:ASP108 3.3 12.8 1.0 CD B:GLU119 3.4 13.5 1.0 CG B:ASP112 3.4 12.8 1.0 C B:ASP110 3.5 15.2 1.0 C B:PHE105 3.5 12.6 1.0 CG B:ASP118 3.5 11.2 1.0 OD2 B:ASP108 3.8 13.4 1.0 CG B:GLU119 3.9 14.2 1.0 N B:ASP112 4.0 13.5 1.0 CB B:ASP112 4.1 11.8 1.0 N B:ASP110 4.1 17.8 1.0 CB B:ASP118 4.1 11.3 1.0 N B:ASP108 4.2 15.0 1.0 CB B:PHE105 4.2 11.2 1.0 CA B:ASP110 4.2 18.0 1.0 CA B:PHE105 4.3 11.2 1.0 CB B:ASP108 4.4 14.2 1.0 N B:ARG111 4.4 20.2 1.0 OD1 B:ASP112 4.4 17.2 1.0 NZ A:LYS270 4.4 15.7 1.0 N B:VAL106 4.5 12.2 1.0 OE1 B:GLU119 4.5 15.6 1.0 OD1 B:ASP118 4.5 13.4 1.0 N B:CYS107 4.5 12.6 1.0 CB B:ASP110 4.5 20.3 1.0 CA B:ARG111 4.5 20.3 1.0 CA B:VAL106 4.6 12.5 1.0 C B:ARG111 4.6 18.9 1.0 CA B:ASP108 4.6 16.0 1.0 CA B:ASP112 4.7 14.6 1.0 N B:SER109 4.8 16.3 1.0 O B:ASP118 4.8 12.7 1.0 C B:VAL106 4.8 12.6 1.0 C B:ASP108 4.8 16.0 1.0 C B:ASP118 5.0 12.2 1.0

Calcium binding site 2 out of 2 in the Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap).


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A Complex Between the Pair of the Ldl Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (Rap). within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca3002 b:11.8 occ:1.00 O B:TRP144 2.3 13.7 1.0 OD2 B:ASP157 2.3 10.8 1.0 OD1 B:ASP147 2.3 12.9 1.0 OD2 B:ASP151 2.3 11.6 1.0 O B:ASP149 2.3 11.4 1.0 OE2 B:GLU158 2.3 12.3 1.0 CG B:ASP147 3.3 14.1 1.0 CG B:ASP151 3.4 11.0 1.0 CD B:GLU158 3.4 12.1 1.0 C B:TRP144 3.5 12.3 1.0 CG B:ASP157 3.5 10.7 1.0 C B:ASP149 3.5 12.0 1.0 OD2 B:ASP147 3.9 14.9 1.0 CB B:ASP151 4.0 11.9 1.0 CG B:GLU158 4.0 11.2 1.0 N B:ASP149 4.0 13.4 1.0 N B:ASP151 4.0 10.8 1.0 N B:ASP147 4.1 14.9 1.0 CA B:ASP149 4.2 13.1 1.0 NZ A:LYS256 4.2 14.2 1.0 CB B:ASP157 4.2 9.8 1.0 N B:CYS146 4.3 15.1 1.0 CB B:ASP149 4.3 13.7 1.0 CA B:TRP144 4.3 11.9 1.0 OD1 B:ASP151 4.4 13.6 1.0 CB B:ASP147 4.4 13.8 1.0 CB B:TRP144 4.4 11.9 1.0 N B:ALA145 4.4 13.2 1.0 OE1 B:GLU158 4.5 14.8 1.0 CA B:ALA145 4.5 14.0 1.0 OD1 B:ASP157 4.5 10.9 1.0 N B:PRO150 4.5 11.8 1.0 C B:ALA145 4.5 14.8 1.0 CA B:ASP147 4.6 15.2 1.0 CA B:PRO150 4.6 11.3 1.0 CA B:ASP151 4.7 10.9 1.0 C B:PRO150 4.7 10.6 1.0 O B:ASP157 4.7 12.6 1.0 N B:ASN148 4.7 14.4 1.0 C B:ASP147 4.8 14.6 1.0 CD1 B:ILE140 4.9 14.2 1.0 C B:ASP157 4.9 11.9 1.0

C.Fisher, N.Beglova, S.C.Blacklow. Structure of An Ldlr-Rap Complex Reveals A General Mode For Ligand Recognition By Lipoprotein Receptors Mol.Cell V. 22 277 2006.
ISSN: ISSN 1097-2765
PubMed: 16630895
DOI: 10.1016/J.MOLCEL.2006.02.021