Atomistry » Calcium » PDB 2f59-2foc » 2fh1
Atomistry »
  Calcium »
    PDB 2f59-2foc »
      2fh1 »

Calcium in PDB 2fh1: C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5

Protein crystallography data

The structure of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5, PDB code: 2fh1 was solved by S.Chumnarnsilpa, A.Loonchanta, B.Xue, H.Choe, D.Urosev, H.Wang, L.D.Burtnick, R.C.Robinson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.69 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.822, 90.320, 156.299, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.4

Calcium Binding Sites:

The binding sites of Calcium atom in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 (pdb code 2fh1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5, PDB code: 2fh1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 1 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2001

b:19.3
occ:1.00
 O A:GLY444 2.3 17.3 1.0
OD1 A:ASP445 2.3 19.3 1.0
O A:HOH2079 2.3 21.8 1.0
O A:THR524 2.4 21.3 1.0
O A:HOH2020 2.4 21.1 1.0
OE1 A:GLU475 2.4 21.2 1.0
OE2 A:GLU475 2.7 17.6 1.0
CD A:GLU475 2.9 17.1 1.0
C A:GLY444 3.3 17.3 1.0
C A:THR524 3.5 22.4 1.0
CG A:ASP445 3.5 17.1 1.0
N A:THR524 3.8 21.6 1.0
CA A:ASP445 3.9 16.5 1.0
N A:ASP445 4.0 15.6 1.0
O A:HOH2009 4.2 17.8 1.0
O A:HOH2085 4.3 25.9 1.0
CB A:ASP445 4.3 16.4 1.0
CA A:GLY444 4.3 17.2 1.0
CA A:THR524 4.3 22.0 1.0
CG A:GLU475 4.3 19.3 1.0
O A:HOH2163 4.4 36.5 1.0
OD2 A:ASP445 4.4 18.5 1.0
O A:HOH2205 4.5 31.8 1.0
N A:SER525 4.6 24.3 1.0
O A:HOH2245 4.6 30.6 1.0
C A:GLY523 4.7 22.2 1.0
O A:HOH2078 4.7 23.5 1.0
CG2 A:THR524 4.7 20.9 1.0
CA A:SER525 4.8 26.1 1.0
CA A:GLY523 4.8 20.2 1.0
CA A:SER471 4.9 19.5 1.0
OG A:SER471 4.9 18.4 1.0
OG1 A:THR472 4.9 26.0 1.0
CB A:SER525 5.0 27.3 1.0

Calcium binding site 2 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 2 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2002

b:17.8
occ:1.00
 O A:ASN564 2.3 17.2 1.0
O A:HOH2044 2.3 21.4 1.0
O A:HOH2059 2.4 21.2 1.0
OD1 A:ASP565 2.4 16.3 1.0
OE2 A:GLU587 2.4 16.8 1.0
OD1 A:ASN564 2.4 19.9 1.0
OE1 A:GLU587 2.6 17.3 1.0
CD A:GLU587 2.9 17.1 1.0
C A:ASN564 3.3 16.3 1.0
CG A:ASN564 3.3 18.9 1.0
CG A:ASP565 3.6 17.9 1.0
CA A:ASP565 3.9 16.6 1.0
N A:ASP565 4.0 16.4 1.0
CB A:ASN564 4.0 17.9 1.0
CA A:ASN564 4.2 17.3 1.0
ND2 A:ASN564 4.2 21.4 1.0
CB A:ASP565 4.3 16.4 1.0
CG A:GLU587 4.4 17.6 1.0
O A:HOH2155 4.4 27.6 1.0
O A:GLY582 4.4 21.6 1.0
OD2 A:ASP565 4.5 17.4 1.0
CG A:ARG542 4.6 15.6 1.0
CA A:ALA583 4.6 20.1 1.0
NE A:ARG542 4.8 19.4 1.0
O A:ALA543 4.9 19.9 1.0
N A:SER584 4.9 20.7 1.0
CA A:ARG542 4.9 14.7 1.0
N A:ALA543 4.9 15.5 1.0

Calcium binding site 3 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 3 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2003

b:17.1
occ:1.00
 OD2 A:ASP670 2.3 16.0 1.0
O A:ASP669 2.3 16.9 1.0
O A:HOH2036 2.4 21.0 1.0
OE2 A:GLU692 2.5 15.7 1.0
OE1 A:GLU692 2.5 16.0 1.0
CD A:GLU692 2.9 15.2 1.0
C A:ASP669 3.4 17.2 1.0
CG A:ASP670 3.5 16.0 1.0
OG A:SER646 3.9 17.9 1.0
CA A:ASP670 4.0 15.1 1.0
N A:ASP670 4.1 15.5 1.0
CB A:ASP670 4.3 16.1 1.0
CG A:GLU692 4.4 17.4 1.0
CB A:ASP669 4.4 20.0 1.0
OD1 A:ASP670 4.4 19.2 1.0
CA A:SER688 4.4 17.0 1.0
O A:HOH2136 4.5 30.5 1.0
CA A:ASP669 4.5 18.2 1.0
ND2 A:ASN647 4.5 20.1 1.0
N A:GLN689 4.6 17.0 1.0
CG A:ASP669 4.6 22.1 1.0
O A:ASP687 4.7 18.5 1.0
CB A:SER688 4.8 17.3 1.0
CB A:SER646 4.9 18.1 1.0
CG A:GLN689 4.9 16.8 1.0
N A:ASN647 4.9 18.4 1.0
OD2 A:ASP669 4.9 26.9 1.0
CB A:LYS648 4.9 24.6 1.0

Calcium binding site 4 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 4 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca3001

b:18.7
occ:1.00
 O B:GLY444 2.3 16.5 1.0
O B:THR524 2.3 18.8 1.0
O B:HOH3063 2.4 21.0 1.0
OD1 B:ASP445 2.4 19.6 1.0
OE1 B:GLU475 2.4 19.6 1.0
O B:HOH3064 2.4 21.0 1.0
OE2 B:GLU475 2.6 18.9 1.0
CD B:GLU475 2.9 18.4 1.0
C B:GLY444 3.3 17.6 1.0
C B:THR524 3.5 19.1 1.0
CG B:ASP445 3.6 18.0 1.0
CA B:ASP445 3.9 16.6 1.0
N B:THR524 3.9 19.6 1.0
N B:ASP445 4.0 17.3 1.0
O B:HOH3021 4.2 19.5 1.0
CA B:GLY444 4.2 16.6 1.0
O B:HOH3046 4.3 25.2 1.0
CB B:ASP445 4.3 17.2 1.0
CA B:THR524 4.3 19.3 1.0
CG B:GLU475 4.3 19.0 1.0
OD2 B:ASP445 4.5 17.3 1.0
N B:SER525 4.5 19.5 1.0
O B:HOH3243 4.5 30.9 1.0
O B:HOH3105 4.6 32.5 1.0
O B:HOH3191 4.6 29.3 1.0
CA B:SER525 4.6 20.4 1.0
O B:HOH3058 4.7 24.2 1.0
CG2 B:THR524 4.7 19.2 1.0
CB B:SER525 4.8 20.5 1.0
C B:GLY523 4.8 20.5 1.0
CA B:SER471 4.9 19.2 1.0
OG B:SER471 4.9 18.7 1.0

Calcium binding site 5 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 5 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca3002

b:17.7
occ:1.00
 OD1 B:ASP565 2.3 15.4 1.0
O B:HOH3062 2.3 19.8 1.0
O B:ASN564 2.3 15.7 1.0
OE2 B:GLU587 2.4 16.8 1.0
OD1 B:ASN564 2.4 20.5 1.0
O B:HOH3068 2.4 22.5 1.0
OE1 B:GLU587 2.6 15.7 1.0
CD B:GLU587 2.8 16.1 1.0
C B:ASN564 3.3 16.2 1.0
CG B:ASN564 3.3 19.0 1.0
CG B:ASP565 3.5 15.3 1.0
CA B:ASP565 3.9 13.9 1.0
N B:ASP565 4.0 15.4 1.0
CB B:ASN564 4.0 17.5 1.0
ND2 B:ASN564 4.2 20.9 1.0
CA B:ASN564 4.3 16.6 1.0
CB B:ASP565 4.3 13.7 1.0
CG B:GLU587 4.3 15.5 1.0
CE B:MET635 4.3 51.0 1.0
O B:HOH3210 4.3 29.6 1.0
OD2 B:ASP565 4.4 17.0 1.0
O B:GLY582 4.5 18.8 1.0
CG B:ARG542 4.6 16.7 1.0
CA B:ALA583 4.7 18.4 1.0
N B:SER584 4.7 17.8 1.0
O B:HOH3229 4.8 37.1 1.0
O B:HOH3209 4.8 43.7 1.0
NE B:ARG542 4.8 17.8 1.0
O B:ALA543 4.8 20.1 1.0
CA B:ARG542 4.9 15.0 1.0
N B:ALA543 4.9 16.1 1.0

Calcium binding site 6 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 6 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca3003

b:22.0
occ:1.00
 O B:ASP669 2.3 22.0 1.0
O B:HOH3034 2.3 25.5 1.0
O B:HOH3081 2.3 27.4 1.0
OE2 B:GLU692 2.4 22.9 1.0
OD2 B:ASP670 2.4 22.1 1.0
O B:HOH3146 2.4 28.9 1.0
OE1 B:GLU692 2.6 22.7 1.0
CD B:GLU692 2.8 22.0 1.0
C B:ASP669 3.4 21.7 1.0
CG B:ASP670 3.6 21.1 1.0
CA B:ASP670 4.0 20.4 1.0
OG B:SER646 4.0 23.0 1.0
N B:ASP670 4.2 21.0 1.0
CB B:ASP669 4.2 23.6 1.0
CG B:GLU692 4.3 22.6 1.0
CB B:ASP670 4.4 20.8 1.0
CA B:ASP669 4.4 23.1 1.0
ND2 B:ASN647 4.4 22.2 1.0
OD1 B:ASP670 4.4 22.4 1.0
CA B:SER688 4.5 25.4 1.0
O B:HOH3143 4.5 35.6 1.0
O B:HOH3283 4.6 40.9 1.0
O B:HOH3325 4.6 36.8 1.0
N B:GLN689 4.6 27.4 1.0
O B:ASP687 4.7 27.3 1.0
CG B:GLN689 4.8 29.0 1.0
N B:ASN647 4.8 21.9 1.0
CB B:SER688 5.0 25.2 1.0
CB B:SER646 5.0 20.6 1.0

Calcium binding site 7 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 7 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca4001

b:25.3
occ:1.00
 OD1 C:ASP445 2.3 27.1 1.0
O C:HOH4133 2.4 29.7 1.0
OE1 C:GLU475 2.4 30.9 1.0
O C:HOH4023 2.4 32.1 1.0
O C:GLY444 2.4 26.3 1.0
O C:THR524 2.5 29.8 1.0
OE2 C:GLU475 2.7 30.4 1.0
CD C:GLU475 2.9 27.9 1.0
C C:GLY444 3.4 24.6 1.0
CG C:ASP445 3.5 22.4 1.0
C C:THR524 3.6 30.6 1.0
N C:THR524 3.8 29.2 1.0
CA C:ASP445 3.9 23.7 1.0
N C:ASP445 4.1 24.7 1.0
O C:HOH4020 4.2 26.3 1.0
O C:HOH4159 4.2 36.1 1.0
CB C:ASP445 4.3 23.7 1.0
CA C:THR524 4.3 29.7 1.0
CG C:GLU475 4.4 30.5 1.0
OD2 C:ASP445 4.4 25.4 1.0
CA C:GLY444 4.4 25.0 1.0
C C:GLY523 4.6 29.7 1.0
N C:SER525 4.7 31.3 1.0
CA C:GLY523 4.7 28.8 1.0
O C:HOH4132 4.7 34.3 1.0
CG2 C:THR524 4.7 29.1 1.0
CA C:SER525 4.9 33.2 1.0
CB C:SER525 4.9 34.1 1.0
OG1 C:THR472 5.0 38.2 1.0
O C:HOH4250 5.0 43.5 1.0

Calcium binding site 8 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 8 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca4002

b:21.5
occ:1.00
 OE2 C:GLU587 2.3 21.5 1.0
OD1 C:ASP565 2.3 21.0 1.0
O C:ASN564 2.4 22.2 1.0
O C:HOH4018 2.4 23.3 1.0
OD1 C:ASN564 2.4 24.9 1.0
O C:HOH4008 2.4 26.3 1.0
OE1 C:GLU587 2.7 22.7 1.0
CD C:GLU587 2.8 20.6 1.0
CG C:ASN564 3.2 24.5 1.0
C C:ASN564 3.3 21.6 1.0
CG C:ASP565 3.5 21.0 1.0
CA C:ASP565 3.9 20.4 1.0
N C:ASP565 4.0 21.8 1.0
CB C:ASN564 4.0 22.9 1.0
ND2 C:ASN564 4.1 26.5 1.0
CA C:ASN564 4.3 22.8 1.0
CB C:ASP565 4.3 20.7 1.0
CG C:GLU587 4.3 22.2 1.0
O C:GLY582 4.4 25.0 1.0
OD2 C:ASP565 4.4 21.4 1.0
O C:HOH4198 4.6 38.7 1.0
CA C:ALA583 4.6 25.5 1.0
CG C:ARG542 4.7 22.6 1.0
N C:SER584 4.8 25.3 1.0
O C:ALA543 4.8 26.7 1.0
N C:ALA543 4.9 23.3 1.0
CA C:ARG542 4.9 21.6 1.0
NE C:ARG542 4.9 24.1 1.0
O C:HOH4164 5.0 37.8 1.0

Calcium binding site 9 out of 9 in 2fh1

Go back to Calcium Binding Sites List in 2fh1
Calcium binding site 9 out of 9 in the C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of C-Terminal Half of Gelsolin Soaked in Low Calcium at pH 4.5 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca4003

b:25.9
occ:1.00
 O C:HOH4293 2.3 35.2 1.0
O C:ASP669 2.3 24.4 1.0
OD2 C:ASP670 2.5 29.6 1.0
O C:HOH4061 2.5 29.3 1.0
OE2 C:GLU692 2.5 25.4 1.0
O C:HOH4045 2.6 32.9 1.0
OE1 C:GLU692 2.6 24.9 1.0
CD C:GLU692 2.9 25.1 1.0
C C:ASP669 3.4 23.8 1.0
CG C:ASP670 3.7 22.8 1.0
CA C:ASP670 4.1 22.3 1.0
OG C:SER646 4.1 26.8 1.0
N C:ASP670 4.2 22.5 1.0
CB C:ASP669 4.3 25.6 1.0
CA C:ASP669 4.4 24.9 1.0
CG C:GLU692 4.4 26.8 1.0
CA C:SER688 4.4 26.1 1.0
OD1 C:ASP670 4.5 26.7 1.0
CB C:ASP670 4.5 23.4 1.0
O C:HOH4263 4.6 43.6 1.0
ND2 C:ASN647 4.6 26.0 1.0
N C:GLN689 4.6 28.0 1.0
O C:ASP687 4.6 26.6 1.0
CG C:GLN689 4.7 33.4 1.0
NE2 C:GLN689 4.8 40.0 1.0
CB C:SER688 4.9 25.4 1.0
CB C:SER646 4.9 24.0 1.0
N C:ASN647 5.0 25.3 1.0

Reference:

S.Chumnarnsilpa, A.Loonchanta, B.Xue, H.Choe, D.Urosev, H.Wang, U.Lindberg, L.D.Burtnick, R.C.Robinson. Calcium Ion Exchange in Crystalline Gelsolin J.Mol.Biol. V. 357 773 2006.
ISSN: ISSN 0022-2836
PubMed: 16466744
DOI: 10.1016/J.JMB.2006.01.026
Page generated: Fri Jul 12 10:26:27 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy