Calcium in PDB 2fvy: High Resolution Glucose Bound Crystal Structure of Ggbp

The structure of High Resolution Glucose Bound Crystal Structure of Ggbp, PDB code: 2fvy was solved by M.J.Borrok, L.L.Kiessling, K.T.Forest, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	9.00 / 0.92
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	119.989, 36.238, 80.101, 90.00, 124.50, 90.00
R / Rfree (%)	10.9 / 13

The binding sites of Calcium atom in the High Resolution Glucose Bound Crystal Structure of Ggbp (pdb code 2fvy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the High Resolution Glucose Bound Crystal Structure of Ggbp, PDB code: 2fvy:

Calcium binding site 1 out of 1 in the High Resolution Glucose Bound Crystal Structure of Ggbp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of High Resolution Glucose Bound Crystal Structure of Ggbp within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca311 b:4.6 occ:1.00 OD1 A:ASP134 2.3 5.7 1.0 OE1 A:GLN142 2.3 5.8 1.0 O A:GLN140 2.3 5.1 1.0 OD1 A:ASN136 2.4 5.7 1.0 OD2 A:ASP138 2.4 5.5 1.0 OE1 A:GLU205 2.5 5.3 1.0 OE2 A:GLU205 2.5 4.9 1.0 CD A:GLU205 2.8 4.7 1.0 CG A:ASP138 3.4 5.7 1.0 H A:ASP138 3.4 7.2 1.0 CG A:ASN136 3.5 5.9 1.0 H A:GLN140 3.5 6.2 1.0 CD A:GLN142 3.5 5.0 1.0 CG A:ASP134 3.5 5.7 1.0 C A:GLN140 3.5 4.6 1.0 HH2 A:TRP127 3.5 8.7 1.0 H A:GLN142 3.6 5.4 1.0 H A:ASN136 3.6 7.0 1.0 HD21 A:ASN136 3.7 9.1 1.0 HA A:ASP134 3.8 6.7 1.0 HB2 A:GLN140 3.8 6.4 1.0 HE21 A:GLN142 3.8 7.2 1.0 OD1 A:ASP138 3.9 6.3 1.0 ND2 A:ASN136 4.0 7.6 1.0 HA A:ILE141 4.0 5.3 1.0 N A:GLN140 4.0 5.2 1.0 NE2 A:GLN142 4.1 6.0 1.0 HB2 A:GLN142 4.2 6.2 1.0 N A:ASP138 4.2 6.0 1.0 H A:LYS137 4.2 7.6 1.0 N A:GLN142 4.2 4.5 1.0 OD2 A:ASP134 4.3 7.6 1.0 CA A:GLN140 4.3 4.9 1.0 H A:GLY139 4.3 7.0 1.0 CG A:GLU205 4.3 4.8 1.0 N A:ASN136 4.4 5.9 1.0 CA A:ASP134 4.4 5.5 1.0 CH2 A:TRP127 4.4 7.3 1.0 CB A:ASP138 4.5 6.0 1.0 HZ2 A:TRP127 4.5 8.9 1.0 CB A:ASP134 4.5 6.0 1.0 N A:ILE141 4.5 4.6 1.0 O A:HOH727 4.5 8.8 1.0 H A:LEU135 4.5 6.9 1.0 CB A:GLN140 4.5 5.3 1.0 C A:ASP134 4.6 5.6 1.0 N A:LYS137 4.6 6.3 1.0 CB A:ASN136 4.6 6.8 1.0 N A:GLY139 4.6 5.8 1.0 CA A:ILE141 4.6 4.4 1.0 CG A:GLN142 4.6 5.5 1.0 HG3 A:GLU205 4.7 5.8 1.0 CA A:ASP138 4.7 5.9 1.0 N A:LEU135 4.7 5.7 1.0 HB3 A:ASP138 4.7 7.3 1.0 CA A:ASN136 4.8 6.6 1.0 HG2 A:GLU205 4.8 5.8 1.0 CB A:GLN142 4.8 5.1 1.0 C A:ASN136 4.8 6.7 1.0 HD22 A:ASN136 4.8 9.1 1.0 C A:ILE141 4.8 4.5 1.0 C A:ASP138 4.9 5.9 1.0 HB2 A:ASP134 4.9 7.2 1.0 HB3 A:ASN136 4.9 8.1 1.0 CZ2 A:TRP127 4.9 7.4 1.0 HE22 A:GLN142 5.0 7.2 1.0 HG2 A:GLN142 5.0 6.7 1.0

M.J.Borrok, L.L.Kiessling, K.T.Forest. Conformational Changes of Glucose/Galactose-Binding Protein Illuminated By Open, Unliganded, and Ultra-High-Resolution Ligand-Bound Structures. Protein Sci. V. 16 1032 2007.
ISSN: ISSN 0961-8368
PubMed: 17473016
DOI: 10.1110/PS.062707807