Calcium in PDB 2fyl: Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1.

The binding sites of Calcium atom in the Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1. (pdb code 2fyl). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1., PDB code: 2fyl:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca83 b:2.4 occ:1.00 O B:TRP22 1.9 2.4 1.0 O B:THR23 2.0 2.2 1.0 O B:ASP27 2.1 2.6 1.0 OD1 B:ASP35 2.5 2.4 1.0 OD1 B:ASP29 2.5 2.7 1.0 OD1 B:ASP25 2.5 2.8 1.0 OE2 B:GLU36 2.5 2.4 1.0 C B:THR23 3.0 2.0 1.0 HG2 B:GLU36 3.1 3.3 1.0 C B:TRP22 3.1 2.2 1.0 C B:ASP27 3.3 2.9 1.0 HA B:THR23 3.4 1.7 1.0 H B:ASP25 3.4 2.6 1.0 CD B:GLU36 3.5 2.5 1.0 H B:ASP29 3.5 2.5 1.0 H B:ASP27 3.6 3.0 1.0 CA B:THR23 3.6 1.8 1.0 H B:LEU26 3.6 2.7 1.0 CG B:ASP25 3.7 3.0 1.0 CG B:GLU36 3.7 2.8 1.0 HB3 B:ASP27 3.8 2.9 1.0 CG B:ASP35 3.8 2.4 1.0 CG B:ASP29 3.8 2.4 1.0 N B:THR23 3.8 2.0 1.0 O B:SER34 4.0 2.5 1.0 O B:ASP35 4.0 1.9 1.0 N B:ASP27 4.0 3.0 1.0 HA B:ASP28 4.1 2.8 1.0 CA B:ASP27 4.1 3.1 1.0 N B:ASP25 4.1 2.7 1.0 N B:CYS24 4.2 2.0 1.0 HA B:CYS24 4.2 2.3 1.0 HB3 B:TRP22 4.2 2.5 1.0 HA B:TRP22 4.2 2.7 1.0 N B:ASP29 4.2 2.5 1.0 HG3 B:GLU36 4.2 3.1 1.0 HB2 B:ASP29 4.2 2.1 1.0 CA B:TRP22 4.2 2.5 1.0 N B:ASP28 4.3 3.0 1.0 C B:ASP35 4.5 2.0 1.0 CB B:ASP27 4.5 3.1 1.0 HB2 B:ASP35 4.5 1.4 1.0 OD2 B:ASP25 4.5 3.3 1.0 CB B:ASP29 4.5 2.2 1.0 OE1 B:GLU36 4.6 2.6 1.0 CA B:CYS24 4.6 2.3 1.0 OD2 B:ASP35 4.6 3.2 1.0 N B:LEU26 4.6 2.9 1.0 CA B:ASP28 4.6 2.9 1.0 HA B:GLU36 4.6 2.4 1.0 CB B:ASP35 4.6 1.8 1.0 CB B:ASP25 4.7 3.1 1.0 HB3 B:ASP25 4.7 2.9 1.0 OD2 B:ASP29 4.7 2.6 1.0 H B:THR23 4.7 2.0 1.0 C B:CYS24 4.8 2.6 1.0 CB B:TRP22 4.8 2.5 1.0 C B:ASP28 4.9 2.8 1.0 CA B:ASP25 4.9 3.0 1.0 H B:CYS24 5.0 1.9 1.0 C B:LEU26 5.0 3.1 1.0 CB B:GLU36 5.0 2.8 1.0

Calcium binding site 2 out of 2 in the Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Haddock Model of the Complex Between Double Module of Lrp, CR56, and First Domain of Receptor Associated Protein, Rap- D1. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca84 b:2.8 occ:1.00 O B:ARG64 1.8 2.5 1.0 OD1 B:ASP76 2.5 2.5 1.0 OE2 B:GLU77 2.5 3.0 1.0 OD1 B:ASP70 2.5 3.6 1.0 OD1 B:ASP66 2.5 2.9 1.0 HA B:ARG64 2.5 2.3 1.0 C B:ARG64 2.8 2.5 1.0 O B:TRP63 2.9 2.5 1.0 H B:ASP66 3.1 3.1 1.0 CA B:ARG64 3.1 2.3 1.0 HB2 B:GLU77 3.4 4.2 1.0 CD B:GLU77 3.5 3.5 1.0 CG B:ASP66 3.6 3.1 1.0 HB2 B:CYS65 3.6 3.0 1.0 CG B:ASP76 3.6 2.8 1.0 HG3 B:GLU77 3.7 3.2 1.0 CG B:ASP70 3.7 4.2 1.0 C B:TRP63 3.7 2.2 1.0 N B:ARG64 3.9 2.2 1.0 HB3 B:ASP70 3.9 3.5 1.0 HG3 B:ARG64 3.9 2.5 1.0 N B:CYS65 4.0 3.0 1.0 CG B:GLU77 4.0 3.5 1.0 N B:ASP66 4.0 3.2 1.0 HB3 B:ASP66 4.1 3.0 1.0 OD2 B:ASP76 4.1 3.1 1.0 CB B:GLU77 4.2 4.0 1.0 O B:ASP76 4.2 3.5 1.0 HD2 B:ARG64 4.3 2.8 1.0 CB B:ASP70 4.3 3.6 1.0 CB B:ASP66 4.3 3.2 1.0 HA B:ASP70 4.4 4.0 1.0 CB B:ARG64 4.4 2.5 1.0 H B:ASN67 4.4 4.6 1.0 H B:ASP68 4.4 4.3 1.0 OD2 B:ASP66 4.5 3.3 1.0 CB B:CYS65 4.5 3.0 1.0 CG B:ARG64 4.6 2.5 1.0 OE1 B:GLU77 4.6 4.3 1.0 C B:ASP76 4.6 3.5 1.0 O B:ASP68 4.7 4.4 1.0 CA B:CYS65 4.7 3.2 1.0 OD2 B:ASP70 4.7 5.3 1.0 H B:CYS65 4.7 3.5 1.0 CA B:ASP66 4.8 3.4 1.0 HB3 B:TRP63 4.8 2.1 1.0 CB B:ASP76 4.8 3.2 1.0 HB3 B:GLU77 4.8 4.5 1.0 CA B:ASP70 4.8 3.8 1.0 C B:CYS65 4.8 3.3 1.0 H B:ARG64 4.8 2.1 1.0 HB3 B:ARG64 4.9 2.5 1.0 HB2 B:ASP76 4.9 3.2 1.0 CD B:ARG64 4.9 2.5 1.0 SG B:CYS65 5.0 2.5 1.0

G.A.Jensen, O.M.Andersen, A.M.Bonvin, I.Bjerrum-Bohr, M.Etzerodt, C.O'shea, F.M.Poulsen, B.B.Kragelund. Binding Site Structure of One Lrp-Rap Complex:Implications For A Common Ligand-Receptor Binding Motif. J.Mol.Biol. V. 362 700 2006.
ISSN: ISSN 0022-2836
PubMed: 16938309
DOI: 10.1016/J.JMB.2006.07.013