Calcium in PDB 2ggm: Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex

The structure of Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex, PDB code: 2ggm was solved by J.R.Thompson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.35
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.150, 59.000, 104.240, 90.00, 94.30, 90.00
R / Rfree (%)	19.2 / 24.5

The binding sites of Calcium atom in the Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex (pdb code 2ggm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex, PDB code: 2ggm:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca400 b:62.7 occ:1.00 O A:LYS120 2.4 34.3 1.0 O A:HOH411 2.4 33.6 1.0 OD1 A:ASP114 2.5 34.4 1.0 OD1 A:ASN125 2.6 27.5 1.0 OD1 A:ASP116 2.7 36.4 1.0 OG1 A:THR118 2.7 38.0 1.0 CG A:ASN125 3.5 34.8 1.0 CG A:ASP114 3.5 38.4 1.0 CG2 A:THR118 3.5 38.4 1.0 CG A:ASP116 3.5 40.3 1.0 CB A:THR118 3.6 40.6 1.0 C A:LYS120 3.6 34.0 1.0 ND2 A:ASN125 3.7 36.0 1.0 OD2 A:ASP116 3.7 35.1 1.0 OG A:SER122 3.9 28.9 1.0 N A:THR118 4.0 42.1 1.0 O A:HOH444 4.1 38.3 1.0 N A:SER122 4.1 29.0 1.0 CB A:ASP114 4.1 34.9 1.0 CA A:ASP114 4.2 36.3 1.0 CA A:ILE121 4.3 30.6 1.0 CA A:THR118 4.3 40.1 1.0 N A:LYS120 4.4 35.1 1.0 OD2 A:ASP114 4.4 37.0 1.0 N A:ILE121 4.5 31.9 1.0 CA A:LYS120 4.6 33.8 1.0 C A:ILE121 4.6 30.1 1.0 C A:THR118 4.7 39.1 1.0 N A:GLU117 4.7 44.3 1.0 CB A:SER122 4.8 28.0 1.0 C A:ASP114 4.8 37.8 1.0 N A:GLY119 4.8 37.5 1.0 CB A:ASP116 4.9 41.8 1.0 CB A:ASN125 4.9 33.3 1.0 C A:ASP116 5.0 44.1 1.0

Calcium binding site 2 out of 4 in the Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:41.4 occ:1.00 O A:HOH490 2.1 40.6 1.0 OD1 A:ASP150 2.1 46.0 1.0 OD1 A:ASP154 2.4 45.0 1.0 O A:GLU156 2.4 38.1 1.0 OD1 A:ASP152 2.4 44.7 1.0 OE2 A:GLU161 2.5 41.2 1.0 OE1 A:GLU161 2.5 40.5 1.0 CD A:GLU161 2.9 39.1 1.0 CG A:ASP152 3.1 44.6 1.0 CG A:ASP150 3.3 44.3 1.0 CG A:ASP154 3.3 41.6 1.0 OD2 A:ASP152 3.4 49.2 1.0 C A:GLU156 3.5 38.0 1.0 OD2 A:ASP154 3.7 42.8 1.0 CA A:ASP150 4.0 44.9 1.0 CB A:ASP150 4.0 43.1 1.0 N A:ASP154 4.1 39.6 1.0 OD2 A:ASP150 4.2 43.8 1.0 N A:GLU156 4.3 39.1 1.0 N A:ASP152 4.3 43.8 1.0 CA A:VAL157 4.3 36.4 1.0 N A:GLY153 4.3 42.0 1.0 CG A:GLU161 4.4 42.7 1.0 N A:SER158 4.4 37.2 1.0 C A:ASP150 4.4 45.4 1.0 N A:VAL157 4.4 36.4 1.0 N A:ARG151 4.4 46.1 1.0 CB A:ASP152 4.4 42.3 1.0 CB A:ASP154 4.4 39.7 1.0 CA A:GLU156 4.5 38.7 1.0 CA A:ASP152 4.6 43.1 1.0 CA A:ASP154 4.7 40.4 1.0 N A:GLY155 4.7 40.6 1.0 C A:ASP152 4.7 42.1 1.0 C A:VAL157 4.8 36.4 1.0 C A:ASP154 4.9 40.0 1.0

Calcium binding site 3 out of 4 in the Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca402 b:50.8 occ:1.00 O B:HOH437 2.2 33.5 1.0 O B:LYS120 2.3 37.8 1.0 OD1 B:ASP114 2.3 38.5 1.0 OD1 B:ASP116 2.4 38.5 1.0 OD1 B:ASN125 2.6 30.4 1.0 OG1 B:THR118 2.7 45.3 1.0 CG B:ASP114 3.3 43.2 1.0 C B:LYS120 3.5 37.4 1.0 CG B:ASP116 3.5 45.6 1.0 CG B:ASN125 3.5 35.6 1.0 CB B:THR118 3.7 47.7 1.0 CG2 B:THR118 3.7 46.4 1.0 ND2 B:ASN125 3.8 33.2 1.0 OD2 B:ASP116 3.9 42.2 1.0 N B:THR118 4.0 49.6 1.0 CB B:ASP114 4.1 39.6 1.0 CA B:ASP114 4.1 41.2 1.0 O B:HOH443 4.2 40.0 1.0 N B:LYS120 4.2 39.5 1.0 OD2 B:ASP114 4.2 46.7 1.0 CA B:THR118 4.3 48.1 1.0 CA B:ILE121 4.3 34.3 1.0 N B:ILE121 4.3 36.5 1.0 OG B:SER122 4.3 32.9 1.0 N B:SER122 4.4 35.3 1.0 CA B:LYS120 4.4 38.1 1.0 N B:GLY119 4.6 44.8 1.0 C B:THR118 4.6 47.2 1.0 C B:ASP114 4.7 43.4 1.0 N B:ASP116 4.7 47.0 1.0 N B:GLU117 4.7 49.0 1.0 CB B:ASP116 4.8 45.5 1.0 C B:ILE121 4.8 34.0 1.0 CB B:ASN125 4.9 34.1 1.0 CB B:LYS120 4.9 38.7 1.0 C B:ASP116 4.9 47.9 1.0 CA B:ASP116 5.0 47.0 1.0

Calcium binding site 4 out of 4 in the Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Human Centrin 2 Xeroderma Pigmentosum Group C Protein Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca403 b:35.4 occ:1.00 O B:HOH412 2.0 42.3 1.0 OD1 B:ASP150 2.1 38.6 1.0 OD1 B:ASP154 2.2 43.1 1.0 OD1 B:ASP152 2.4 50.0 1.0 O B:GLU156 2.4 40.1 1.0 OE1 B:GLU161 2.6 52.5 1.0 OE2 B:GLU161 2.9 49.1 1.0 CD B:GLU161 3.0 49.9 1.0 CG B:ASP150 3.2 42.6 1.0 CG B:ASP154 3.2 45.1 1.0 CG B:ASP152 3.3 43.4 1.0 C B:GLU156 3.5 39.8 1.0 OD2 B:ASP152 3.6 49.3 1.0 OD2 B:ASP154 3.7 46.8 1.0 CB B:ASP150 4.0 41.2 1.0 CA B:ASP150 4.0 43.3 1.0 OD2 B:ASP150 4.1 43.6 1.0 N B:ASP154 4.1 41.1 1.0 N B:GLU156 4.2 40.3 1.0 CA B:VAL157 4.3 39.9 1.0 C B:ASP150 4.3 43.6 1.0 N B:ASP152 4.4 41.3 1.0 N B:VAL157 4.4 39.5 1.0 N B:GLY153 4.4 41.4 1.0 CB B:ASP154 4.4 42.8 1.0 N B:SER158 4.4 42.6 1.0 CA B:GLU156 4.5 39.8 1.0 CG B:GLU161 4.5 47.9 1.0 N B:GLY155 4.5 42.6 1.0 CB B:ASP152 4.5 40.2 1.0 N B:ARG151 4.6 43.7 1.0 CA B:ASP154 4.7 42.6 1.0 CA B:ASP152 4.7 41.3 1.0 O B:ASP150 4.8 45.4 1.0 C B:ASP152 4.8 41.1 1.0 C B:ASP154 4.9 42.2 1.0 C B:VAL157 4.9 41.0 1.0

J.R.Thompson, Z.C.Ryan, J.L.Salisbury, R.Kumar. The Structure of the Human Centrin 2-Xeroderma Pigmentosum Group C Protein Complex. J.Biol.Chem. V. 281 18746 2006.
ISSN: ISSN 0021-9258
PubMed: 16627479
DOI: 10.1074/JBC.M513667200