Calcium in PDB 2gjv: Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium

The structure of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium, PDB code: 2gjv was solved by G.Minasov, L.Shuvalova, J.S.Brunzelle, I.I.Vorontsov, F.R.Collart, A.Joachimiak, W.F.Anderson, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.90 / 2.39
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	134.137, 76.995, 85.112, 90.00, 109.25, 90.00
R / Rfree (%)	16.8 / 24.9

The structure of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium also contains other interesting chemical elements:

Chlorine

(Cl)

6 atoms

The binding sites of Calcium atom in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium (pdb code 2gjv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium, PDB code: 2gjv:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca153 b:32.3 occ:0.50 O A:HOH171 2.4 43.1 1.0 OD1 A:ASN56 2.4 32.3 1.0 O A:HOH191 2.8 37.7 1.0 CG A:ASN56 3.5 31.6 1.0 ND2 A:ASN56 4.3 30.5 1.0 O A:HOH263 4.3 41.1 1.0 CA A:ASN56 4.4 31.9 1.0 N A:ASN56 4.4 31.0 1.0 CB A:ASN56 4.5 31.6 1.0 OE1 A:GLU53 4.6 25.2 1.0 O A:PRO54 4.8 27.3 1.0

Calcium binding site 2 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca154 b:44.5 occ:0.50 O A:PRO19 2.4 29.4 1.0 O A:HOH262 2.7 34.0 1.0 C A:PRO19 3.5 29.1 1.0 CA A:PRO19 4.2 28.2 1.0 O A:HOH189 4.4 23.0 1.0 OE1 A:GLN39 4.5 32.1 1.0 CB A:PRO19 4.6 28.1 1.0 N A:ASP20 4.6 30.0 1.0 CA A:ASP20 4.7 31.4 1.0 NE2 A:GLN39 5.0 33.3 1.0

Calcium binding site 3 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca153 b:31.9 occ:0.50 O B:HOH251 2.3 35.4 1.0 O B:HOH250 2.4 29.3 1.0 O B:PRO19 2.4 26.4 1.0 O B:HOH162 2.6 32.1 1.0 C B:PRO19 3.6 26.4 1.0 CA B:PRO19 4.3 25.7 1.0 N B:ASP20 4.6 27.8 1.0 CB B:PRO19 4.6 25.5 1.0 CA B:ASP20 4.6 29.5 1.0 O B:HOH195 4.8 19.8 1.0 OD1 B:ASP20 4.8 36.0 1.0 O B:MET21 4.9 30.9 1.0

Calcium binding site 4 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca153 b:27.2 occ:0.50 O C:HOH156 2.2 33.0 1.0 O C:PRO19 2.4 25.3 1.0 O C:HOH154 2.6 35.0 1.0 O C:HOH155 2.7 33.5 1.0 C C:PRO19 3.5 25.0 1.0 CA C:PRO19 4.1 24.8 1.0 O C:HOH163 4.4 24.4 1.0 CB C:PRO19 4.5 24.6 1.0 N C:ASP20 4.5 26.0 1.0 CA C:ASP20 4.8 27.1 1.0 O C:HOH231 4.8 35.4 1.0 OD1 C:ASP20 4.8 29.5 1.0 NE2 C:GLN39 4.9 35.5 1.0

Calcium binding site 5 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca153 b:58.1 occ:1.00 OE2 D:GLU16 2.5 33.6 1.0 CD D:GLU16 3.2 29.9 1.0 OE1 D:GLU16 3.3 33.5 1.0 CG D:GLU16 4.6 29.6 1.0 OD1 D:ASN12 4.7 28.8 1.0

Calcium binding site 6 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca154 b:56.2 occ:0.50 O D:PRO19 2.3 26.5 1.0 O D:HOH249 2.8 28.7 1.0 C D:PRO19 3.5 26.7 1.0 O D:HOH241 4.3 34.8 1.0 CA D:PRO19 4.4 25.9 1.0 N D:ASP20 4.4 27.5 1.0 CA D:ASP20 4.5 29.0 1.0 CB D:PRO19 4.7 25.7 1.0 OD1 D:ASP20 4.8 33.4 1.0 O D:HOH159 4.8 28.8 1.0 O D:MET21 5.0 31.1 1.0 C D:ASP20 5.0 28.9 1.0

Calcium binding site 7 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca153 b:48.1 occ:1.00 OE2 E:GLU16 2.5 26.1 1.0 CD E:GLU16 3.3 27.8 1.0 OE1 E:GLU16 3.5 32.2 1.0 OD1 E:ASN12 4.7 23.1 1.0 CG E:GLU16 4.7 27.6 1.0 O E:HOH238 4.7 19.4 1.0

Calcium binding site 8 out of 8 in the Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of A Protein of Unknown Function From Salmonella Typhimurium within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca153 b:29.9 occ:0.50 O F:PRO19 2.4 27.3 1.0 C F:PRO19 3.5 27.3 1.0 O F:HOH250 4.2 29.0 1.0 O F:HOH157 4.2 25.9 1.0 CA F:PRO19 4.2 26.5 1.0 CB F:PRO19 4.6 26.2 1.0 O F:MET21 4.6 28.7 1.0 N F:ASP20 4.6 28.2 1.0 CA F:ASP20 4.9 29.3 1.0

G.Minasov, L.Shuvalova, J.S.Brunzelle, I.I.Vorontsov, F.R.Collart, W.F.Anderson. Crystal Structure of A Hypothetical Protein From Salmonella Typhimurium To Be Published.