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Calcium in PDB 2gpj: Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution, PDB code: 2gpj was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.76 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 100.540, 100.540, 67.510, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 23.2

Other elements in 2gpj:

The structure of Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution (pdb code 2gpj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution, PDB code: 2gpj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2gpj

Go back to Calcium Binding Sites List in 2gpj
Calcium binding site 1 out of 2 in the Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca252

b:82.7
occ:1.00
O A:HIS159 3.6 41.6 1.0
CG A:GLU161 3.8 45.5 1.0
O A:GLY139 3.8 38.5 1.0
CD A:GLU161 4.0 59.6 1.0
OE2 A:GLU161 4.2 70.8 1.0
CG1 A:VAL138 4.3 48.8 1.0
N A:GLY139 4.4 42.8 1.0
CE1 A:TYR140 4.5 44.5 1.0
OE1 A:GLU161 4.5 52.3 1.0
C A:GLY139 4.6 38.6 1.0
CA A:GLY139 4.7 40.6 1.0
C A:HIS159 4.7 43.5 1.0
CD1 A:LEU187 4.8 42.9 1.0
CD1 A:TYR140 4.9 43.7 1.0
CZ A:TYR140 4.9 30.4 1.0

Calcium binding site 2 out of 2 in 2gpj

Go back to Calcium Binding Sites List in 2gpj
Calcium binding site 2 out of 2 in the Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Siderophore-Interacting Protein (SPUTCN32_0076) From Shewanella Putrefaciens Cn-32 at 2.20 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca253

b:65.1
occ:1.00
NE2 A:HIS208 2.3 59.5 1.0
OXT A:ACY514 2.7 68.8 1.0
O A:ACY514 3.1 72.1 1.0
CE1 A:HIS208 3.1 52.8 1.0
C A:ACY514 3.3 69.9 1.0
CD2 A:HIS208 3.3 53.6 1.0
CG A:HIS213 3.5 49.5 1.0
CB A:ALA212 4.0 57.9 1.0
ND1 A:HIS208 4.3 49.7 1.0
CG A:HIS208 4.4 51.2 1.0
CH3 A:ACY514 4.7 67.8 1.0
CE3 A:TRP186 4.9 45.7 1.0
CA A:ALA182 4.9 43.1 1.0
CZ3 A:TRP186 5.0 44.1 1.0
CB A:HIS213 5.0 62.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 03:38:29 2020

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