Calcium in PDB 2gqt: Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus

Enzymatic activity of Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus

All present enzymatic activity of Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus:
1.1.1.158;

Protein crystallography data

The structure of Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus, PDB code: 2gqt was solved by M.-K.Kim, S.H.Eom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	23.07 / 1.30
*Space group*	P 1
*Cell size a, b, c (Å), α, β, γ (°)*	29.717, 46.501, 48.714, 64.83, 77.04, 84.40
*R / R_free (%)*	18.7 / 20.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus (pdb code 2gqt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus, PDB code: 2gqt:

Calcium binding site 1 out of 1 in 2gqt

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Calcium Binding Sites List in 2gqt

Calcium binding site 1 out of 1 in the Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Ca501 b:12.6 occ:1.00	O	A:VAL140	2.3	9.7	1.0
	O	A:HOH618	2.4	11.1	1.0
	O	A:HOH617	2.4	9.6	1.0
	O	A:HOH669	2.4	19.5	1.0
	O	A:HOH637	2.4	16.5	1.0
	C	A:VAL140	3.5	9.3	1.0
	OE2	A:GLU145	4.4	8.5	1.0
	N	A:TYR141	4.4	8.8	1.0
	CA	A:VAL140	4.5	9.9	1.0
	N	A:VAL140	4.5	9.8	1.0
	CA	A:TYR141	4.5	8.8	1.0
	OE1	A:GLU145	4.6	8.8	1.0
	CB	A:VAL140	4.8	10.2	1.0
	CD1	A:TYR141	4.9	10.1	1.0
	CD	A:GLU145	4.9	8.7	1.0
	O	A:HOH715	5.0	17.7	1.0

Reference:

M.-K.Kim, M.K.Cho, H.-E.Song, D.Kim, B.-H.Park, J.H.Lee, G.B.Kang, S.H.Kim, Y.J.Im, D.-S.Lee, S.H.Eom. Crystal Structure of Udp-N-Acetylenolpyruvylglucosamine Reductase (Murb) From Thermus Caldophilus Proteins V. 66 751 2006.
ISSN: ISSN 0887-3585
PubMed: 17120230
DOI: 10.1002/PROT.21174

Page generated: Fri Jul 12 10:52:51 2024

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