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Calcium in PDB 2hcn: Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus

Enzymatic activity of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus

All present enzymatic activity of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus:
2.7.7.48;

Protein crystallography data

The structure of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus, PDB code: 2hcn was solved by M.P.Egloff, H.Malet, Marseilles Structural Genomics Program @ Afmb(Msgp), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.82 / 2.35
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 110.064, 110.064, 68.572, 90.00, 90.00, 90.00
R / Rfree (%) 20.7 / 25.9

Other elements in 2hcn:

The structure of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus (pdb code 2hcn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus, PDB code: 2hcn:

Calcium binding site 1 out of 1 in 2hcn

Go back to Calcium Binding Sites List in 2hcn
Calcium binding site 1 out of 1 in the Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Rna Dependent Rna Polymerase Domain From West Nile Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1

b:56.0
occ:1.00
 OD1 A:ASP669 2.4 61.7 1.0
O A:HOH986 2.4 47.0 1.0
O A:HOH987 2.4 51.4 1.0
O A:HOH985 2.5 43.4 1.0
O A:HOH999 2.5 54.8 1.0
OD1 A:ASP536 2.5 61.3 1.0
CG A:ASP536 3.4 58.8 1.0
CG A:ASP669 3.6 58.6 1.0
OD2 A:ASP536 3.6 62.2 1.0
O A:ALA534 4.0 56.5 1.0
O A:HOH1013 4.1 60.8 1.0
OD2 A:ASP669 4.1 60.3 1.0
O A:CYS670 4.3 55.4 1.0
O A:PRO712 4.4 55.4 1.0
O A:HOH971 4.5 51.2 1.0
C A:ALA534 4.6 54.7 1.0
N A:CYS670 4.6 54.8 1.0
CB A:ALA534 4.7 54.7 1.0
CB A:ASP536 4.8 57.1 1.0
CA A:ASP669 4.8 55.4 1.0
CB A:ASP669 4.8 55.5 1.0
O A:ASP535 4.8 55.3 1.0
C A:ASP535 4.9 55.1 1.0
N A:ASP536 4.9 56.0 1.0

Reference:

H.Malet, M.P.Egloff, B.Selisko, R.E.Butcher, P.J.Wright, M.Roberts, A.Gruez, G.Sulzenbacher, C.Vonrhein, G.Bricogne, J.M.Mackenzie, A.A.Khromykh, A.D.Davidson, B.Canard. Crystal Structure of the Rna Polymerase Domain of the West Nile Virus Non-Structural Protein 5 J.Biol.Chem. V. 282 10678 2007.
ISSN: ISSN 0021-9258
PubMed: 17287213
DOI: 10.1074/JBC.M607273200
Page generated: Fri Jul 12 11:03:10 2024

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