Calcium in PDB 2ho0: Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region

The structure of Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region, PDB code: 2ho0 was solved by D.Ndjonka, C.E.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.14 / 2.50
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	59.650, 59.650, 148.410, 90.00, 90.00, 120.00
R / Rfree (%)	25.3 / 32.1

The binding sites of Calcium atom in the Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region (pdb code 2ho0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region, PDB code: 2ho0:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:37.0 occ:1.00 OE2 A:GLU171 2.6 21.2 1.0 OD2 A:ASP138 2.6 30.7 1.0 O A:HOH407 2.8 30.8 1.0 OE1 A:GLU171 2.9 23.7 1.0 O A:HOH406 3.0 21.0 1.0 CD A:GLU171 3.1 21.9 1.0 CG A:ASP138 3.6 26.3 1.0 OD1 A:ASP138 3.8 24.7 1.0 CG A:GLU171 4.6 23.2 1.0 N A:ASP138 4.6 21.7 1.0 CB A:SER137 4.7 19.4 1.0 O A:HOH443 4.9 18.1 1.0 CB A:ASP138 4.9 23.5 1.0 OG A:SER137 5.0 19.1 1.0

Calcium binding site 2 out of 4 in the Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:25.4 occ:1.00 O A:HOH464 0.6 7.9 1.0 O A:HOH424 2.0 64.7 1.0 O A:HOH478 2.0 24.1 1.0 O A:HOH448 2.0 27.5 1.0 O A:HOH463 2.9 24.1 1.0 OE1 A:GLU175 2.9 23.5 1.0 CD A:GLU175 3.4 23.7 1.0 CG A:GLU175 3.8 21.9 1.0 NZ A:LYS224 4.0 20.7 1.0 OE2 A:GLU175 4.2 23.9 1.0 OD2 A:ASP178 4.2 31.1 1.0 OD1 A:ASP178 4.6 29.0 1.0 O A:ALA173 4.6 20.8 1.0 CG A:ASP178 4.8 27.3 1.0

Calcium binding site 3 out of 4 in the Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:27.1 occ:1.00 OD1 A:ASP162 1.8 48.9 1.0 CG A:ASP162 2.8 47.7 1.0 O A:HOH447 2.8 33.2 1.0 O A:HOH433 2.8 36.5 1.0 O A:HOH462 2.9 42.8 1.0 O A:HOH401 3.1 65.7 0.5 OD2 A:ASP162 3.2 49.7 1.0 O A:GLU146 3.4 44.3 1.0 CB A:GLU146 3.6 45.5 1.0 CA A:GLU146 3.6 43.0 1.0 C A:GLU146 3.8 42.8 1.0 OE2 A:GLU146 4.0 56.1 1.0 CG A:GLU146 4.0 51.5 1.0 CB A:ASP162 4.1 44.4 1.0 CD A:GLU146 4.1 55.2 1.0 O A:VAL145 4.9 38.8 1.0 OE1 A:GLU146 4.9 58.4 1.0 N A:GLU146 5.0 40.8 1.0 CA A:ASP162 5.0 42.5 1.0

Calcium binding site 4 out of 4 in the Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca304 b:49.5 occ:1.00 O A:HOH479 1.4 23.9 1.0 O A:SER228 2.7 31.4 1.0 O A:HOH449 2.8 32.5 1.0 O A:HOH476 2.9 26.0 1.0 O A:HOH456 2.9 35.6 1.0 OG A:SER228 3.1 28.8 1.0 C A:SER228 3.5 29.9 1.0 CA A:SER228 4.1 29.1 1.0 N A:SER228 4.2 26.3 1.0 CB A:SER228 4.2 28.6 1.0 N A:GLN229 4.3 31.0 1.0 CA A:GLN229 4.5 31.3 1.0 NE2 A:GLN229 4.7 30.7 1.0 O A:GLN229 4.8 31.2 1.0

D.Ndjonka, C.E.Bell. Structure of A Hyper-Cleavable Monomeric Fragment of Phage Lambda Repressor Containing the Cleavage Site Region. J.Mol.Biol. V. 362 479 2006.
ISSN: ISSN 0022-2836
PubMed: 16934834
DOI: 10.1016/J.JMB.2006.07.026