Calcium in PDB 2i5w: Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog

All present enzymatic activity of Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog:
4.2.99.18;

The structure of Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog, PDB code: 2i5w was solved by A.Banerjee, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.76 / 2.60
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	91.524, 91.524, 211.848, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 26.6

The binding sites of Calcium atom in the Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog (pdb code 2i5w). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog, PDB code: 2i5w:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog within 5.0Å range: probe atom residue distance (Å) B Occ F:Ca61 b:76.7 occ:1.00 O A:CYS241 2.5 51.4 1.0 O A:VAL246 2.6 44.7 1.0 OP1 F:DC26 2.6 51.4 1.0 OP2 F:DC26 2.7 59.2 1.0 P F:DC26 3.1 56.6 1.0 O A:LEU243 3.2 42.7 1.0 C A:CYS241 3.6 50.6 1.0 C A:VAL246 3.7 42.7 1.0 C A:LEU243 4.1 45.1 1.0 N A:VAL246 4.2 40.0 1.0 CA A:CYS241 4.2 50.1 1.0 O3' F:DT25 4.3 60.9 1.0 O5' F:DC26 4.3 57.3 1.0 CA A:VAL246 4.4 40.2 1.0 O A:ILE242 4.4 48.6 1.0 C A:ILE242 4.5 49.4 1.0 N A:GLY247 4.7 45.2 1.0 N A:ILE242 4.7 52.8 1.0 CB A:VAL246 4.7 39.4 1.0 N A:GLY245 4.7 47.4 1.0 CB A:CYS241 4.7 52.6 1.0 N A:LEU243 4.7 48.9 1.0 CA A:PRO244 4.8 45.6 1.0 CA A:GLY247 4.8 44.1 1.0 N A:PRO244 4.9 43.1 1.0 CA A:ILE242 4.9 51.9 1.0 C3' F:DT25 4.9 60.6 1.0

Calcium binding site 2 out of 2 in the Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of HOGG1 Crosslinked to Dna Sampling A Normal G Adjacent to An Oxog within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca324 b:81.7 occ:0.50 O A:HOH372 2.9 49.7 1.0 O A:HOH371 3.8 45.3 1.0 O A:ASP278 4.3 45.6 1.0 O A:HOH332 4.3 30.4 1.0 ND1 A:HIS119 4.4 51.9 1.0

A.Banerjee, G.L.Verdine. A Nucleobase Lesion Remodels the Interaction of Its Normal Neighbor in A Dna Glycosylase Complex. Proc.Natl.Acad.Sci.Usa V. 103 15020 2006.
ISSN: ISSN 0027-8424
PubMed: 17015827
DOI: 10.1073/PNAS.0603644103