Calcium in PDB 2j38: Crystal Structure of A Human Factor Xa Inhibitor Complex

All present enzymatic activity of Crystal Structure of A Human Factor Xa Inhibitor Complex:
3.4.21.6;

The structure of Crystal Structure of A Human Factor Xa Inhibitor Complex, PDB code: 2j38 was solved by S.Senger, M.A.Convery, C.Chan, N.S.Watson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.1
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	56.794, 72.731, 79.895, 90.00, 90.00, 90.00
R / Rfree (%)	21.1 / 30.2

The structure of Crystal Structure of A Human Factor Xa Inhibitor Complex also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Calcium atom in the Crystal Structure of A Human Factor Xa Inhibitor Complex (pdb code 2j38). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of A Human Factor Xa Inhibitor Complex, PDB code: 2j38:

Calcium binding site 1 out of 1 in the Crystal Structure of A Human Factor Xa Inhibitor Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Human Factor Xa Inhibitor Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1246 b:25.6 occ:1.00 O A:HOH2050 2.1 24.8 1.0 O A:GLN75 2.3 37.3 1.0 O A:ASN72 2.3 25.5 1.0 OD1 A:ASP70 2.3 25.2 1.0 OE1 A:GLU80 2.3 24.6 1.0 O A:HOH2046 2.7 26.7 1.0 C A:ASN72 3.4 25.1 1.0 CG A:ASP70 3.5 23.5 1.0 C A:GLN75 3.5 44.0 1.0 CD A:GLU80 3.5 26.5 1.0 N A:ASN72 4.0 23.6 1.0 OD2 A:ASP70 4.0 26.5 1.0 CG A:GLU80 4.1 22.8 1.0 N A:GLU77 4.1 46.1 1.0 CA A:ASN72 4.2 24.0 1.0 CA A:GLU76 4.3 47.2 1.0 N A:GLU76 4.3 45.6 1.0 N A:GLN75 4.3 45.7 1.0 N A:THR73 4.4 24.9 1.0 O A:HOH2047 4.4 48.1 1.0 CB A:ASN72 4.5 23.9 1.0 CA A:GLN75 4.5 46.2 1.0 CA A:THR73 4.5 27.8 1.0 OE2 A:GLU80 4.5 20.9 1.0 N A:ARG71 4.6 20.1 1.0 CB A:ASP70 4.6 22.9 1.0 OE2 A:GLU76 4.6 69.3 1.0 C A:GLU76 4.7 46.7 1.0 C A:THR73 4.8 32.4 1.0 CA A:ASP70 4.8 21.7 1.0 CB A:GLU77 4.9 46.4 1.0

S.Senger, M.A.Convery, C.Chan, N.S.Watson. Arylsulfonamides: A Study of the Relationship Between Activity and Conformational Preferences For A Series of Factor Xa Inhibitors. Bioorg.Med.Chem.Lett. V. 16 5731 2006.
ISSN: ISSN 0960-894X
PubMed: 16982192
DOI: 10.1016/J.BMCL.2006.08.092