Atomistry » Calcium » PDB 2j3u-2jdh » 2j5w
Atomistry »
  Calcium »
    PDB 2j3u-2jdh »
      2j5w »

Calcium in PDB 2j5w: Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites

Enzymatic activity of Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites

All present enzymatic activity of Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites:
1.16.3.1;

Protein crystallography data

The structure of Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites, PDB code: 2j5w was solved by I.Bento, C.Peixoto, V.N.Zaitsev, P.F.Lindley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 68.52 / 2.80
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 209.140, 209.139, 82.752, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 22.6

Other elements in 2j5w:

The structure of Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites also contains other interesting chemical elements:

Copper (Cu) 7 atoms
Sodium (Na) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites (pdb code 2j5w). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites, PDB code: 2j5w:

Calcium binding site 1 out of 1 in 2j5w

Go back to Calcium Binding Sites List in 2j5w
Calcium binding site 1 out of 1 in the Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation Binding Sites within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca3042

b:43.8
occ:1.00
 OD2 A:ASP128 2.2 41.7 1.0
O A:HOH2025 2.3 44.0 1.0
O A:LYS109 2.4 43.2 1.0
O A:GLN124 2.4 42.2 1.0
OD1 A:ASP127 2.5 45.5 1.0
OD2 A:ASP127 2.5 44.3 1.0
OD1 A:ASP128 2.5 44.4 1.0
O A:HOH2030 2.5 33.8 1.0
CG A:ASP128 2.7 43.8 1.0
CG A:ASP127 2.8 44.8 1.0
C A:LYS109 3.5 43.7 1.0
C A:GLN124 3.6 42.9 1.0
CB A:ASP128 4.2 43.9 1.0
CA A:ARG125 4.3 42.9 1.0
O A:ALA114 4.3 39.0 1.0
N A:ARG125 4.3 42.9 1.0
CB A:ASP127 4.3 44.5 1.0
O A:HOH2026 4.4 39.2 1.0
N A:GLU110 4.4 43.5 1.0
CA A:LYS109 4.5 43.9 1.0
CA A:GLU110 4.5 43.3 1.0
CB A:GLU112 4.6 40.5 1.0
N A:ASP128 4.6 44.1 1.0
C A:GLU110 4.7 43.0 1.0
CA A:GLN124 4.7 43.3 1.0
N A:GLY113 4.7 39.8 1.0
N A:GLU112 4.7 40.9 1.0
CB A:LYS109 4.7 43.7 1.0
OD2 A:ASP118 4.8 38.4 1.0
C A:ARG125 4.9 43.0 1.0
OE1 A:GLU112 4.9 40.5 1.0
CB A:GLN124 4.9 43.2 1.0
CA A:ASP128 5.0 44.1 1.0
N A:HIS111 5.0 42.8 1.0

Reference:

I.Bento, C.Peixoto, V.N.Zaitsev, P.F.Lindley. Ceruloplasmin Revisited: Structural and Functional Roles of Various Metal Cation-Binding Sites. Acta Crystallogr.,Sect.D V. 63 240 2007.
ISSN: ISSN 0907-4449
PubMed: 17242517
DOI: 10.1107/S090744490604947X
Page generated: Fri Jul 12 13:27:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy