Calcium in PDB 2j61: L-Ficolin Complexed to N-Acetylglucosamine (Forme C)

The structure of L-Ficolin Complexed to N-Acetylglucosamine (Forme C), PDB code: 2j61 was solved by V.Garlatti, C.Gaboriaud, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 2.70
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	79.591, 79.591, 172.040, 90.00, 90.00, 120.00
R / Rfree (%)	20.7 / 29.1

The binding sites of Calcium atom in the L-Ficolin Complexed to N-Acetylglucosamine (Forme C) (pdb code 2j61). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the L-Ficolin Complexed to N-Acetylglucosamine (Forme C), PDB code: 2j61:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the L-Ficolin Complexed to N-Acetylglucosamine (Forme C)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of L-Ficolin Complexed to N-Acetylglucosamine (Forme C) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1289 b:73.7 occ:1.00 OD2 A:ASP224 2.3 69.5 1.0 OD2 A:ASP226 2.4 77.1 1.0 O A:GLY230 2.5 62.6 1.0 O A:ASN228 2.6 67.3 1.0 OD1 A:ASP224 2.8 67.2 1.0 CG A:ASP224 2.9 69.2 1.0 CG A:ASP226 3.1 74.1 1.0 O A:HOH2023 3.2 53.7 1.0 O A:ASP226 3.4 69.4 1.0 OD1 A:ASP226 3.4 75.3 1.0 O A:THR229 3.5 62.6 1.0 C A:GLY230 3.5 64.0 1.0 C A:ASN228 3.8 66.2 1.0 C A:ASP226 4.0 71.0 1.0 C A:THR229 4.0 64.5 1.0 N A:ASN228 4.2 66.4 1.0 N A:ASP226 4.2 70.4 1.0 CB A:ASP226 4.2 71.9 1.0 CA A:ASP226 4.3 71.3 1.0 N A:ASN231 4.3 63.6 1.0 CB A:ASP224 4.3 69.1 1.0 CA A:ASN231 4.4 63.0 1.0 N A:GLY230 4.5 64.7 1.0 CA A:GLY230 4.5 64.4 1.0 CA A:ASN228 4.6 65.9 1.0 CA A:THR229 4.8 65.1 1.0 N A:THR229 4.8 65.4 1.0 CB A:ASN228 5.0 64.9 1.0

Calcium binding site 2 out of 2 in the L-Ficolin Complexed to N-Acetylglucosamine (Forme C)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of L-Ficolin Complexed to N-Acetylglucosamine (Forme C) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca1289 b:50.7 occ:0.30 O B:HOH2024 2.5 78.7 1.0 O B:ASN228 2.5 81.6 1.0 OD2 B:ASP226 2.7 82.3 1.0 OD1 B:ASP224 2.9 74.7 1.0 CG B:ASP224 3.2 75.2 1.0 OD2 B:ASP224 3.2 76.5 1.0 O B:ASP226 3.4 81.9 1.0 C B:ASN228 3.5 82.3 1.0 CG B:ASP226 3.8 81.0 1.0 O B:GLY230 3.9 83.4 1.0 N B:ASP226 4.0 79.6 1.0 C B:ASP226 4.1 81.4 1.0 N B:ASN228 4.2 80.7 1.0 CB B:ASP224 4.2 74.2 1.0 N B:THR229 4.3 84.0 1.0 CA B:ASN228 4.4 80.7 1.0 CA B:ASP226 4.4 80.8 1.0 C B:ASN225 4.7 78.6 1.0 C B:ASP224 4.7 75.7 1.0 CA B:THR229 4.7 84.8 1.0 OD1 B:ASP226 4.7 80.0 1.0 CB B:ASP226 4.7 80.2 1.0 N B:ASN225 4.7 76.8 1.0 O B:ASP224 4.9 74.4 1.0 C B:THR229 4.9 85.1 1.0 CA B:ASN225 4.9 77.9 1.0

V.Garlatti, N.Belloy, L.Martin, M.Lacroix, M.Matsushita, Y.Endo, T.Fujita, J.C.Fontecilla-Camps, G.J.Arlaud, N.M.Thielens, C.Gaboriaud. Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins. Embo J. V. 26 623 2007.
ISSN: ISSN 0261-4189
PubMed: 17215869
DOI: 10.1038/SJ.EMBOJ.7601500