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Calcium in PDB 2j7t: Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274

Enzymatic activity of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274

All present enzymatic activity of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274, PDB code: 2j7t was solved by A.C.W.Pike, P.Rellos, O.Fedorov, S.Das, J.Debreczeni, F.Sobott, S.Watt, P.Savitsky, J.Eswaran, A.P.Turnbull, E.Papagrigoriou, E.Ugochukwa, F.Gorrec, C.C.Umeano, F.Von Delft, C.H.Arrowsmith, A.Edwards, J.Weigelt, M.Sundstrom, S.Knapp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.00 / 2.00
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 49.192, 112.960, 133.817, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 23.5

Other elements in 2j7t:

The structure of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 (pdb code 2j7t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274, PDB code: 2j7t:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 2j7t

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Calcium binding site 1 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca332

b:51.4
occ:1.00
 O A:HOH2019 2.5 53.5 1.0
O A:HOH2013 2.5 32.8 1.0
O A:HOH2016 2.5 35.1 1.0
O A:HOH2014 2.6 47.4 1.0
O A:HOH2058 2.6 34.1 1.0
CB A:LYS95 4.1 39.2 1.0
O A:HIS90 4.3 37.2 1.0
OE1 A:GLU111 4.3 46.7 1.0
CG A:LYS95 4.3 40.5 1.0
CA A:PRO91 4.6 37.6 1.0
O A:HOH2011 4.7 32.0 1.0
O A:HOH2004 4.8 53.4 1.0
C A:HIS90 4.8 37.8 1.0
O A:PRO91 4.9 37.9 1.0
NE A:ARG172 4.9 39.7 1.0
OD1 A:ASP89 4.9 45.4 1.0
OE2 A:GLU111 5.0 43.5 1.0

Calcium binding site 2 out of 7 in 2j7t

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Calcium binding site 2 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca333

b:61.8
occ:1.00
 O A:HOH2051 2.3 36.4 1.0
O A:HOH2020 2.4 50.2 1.0
O A:HOH2129 2.4 41.0 1.0
O A:HOH2130 2.6 35.8 1.0
O A:HOH2059 3.1 33.9 0.5
O A:GLY161 3.8 38.8 1.0
OD1 A:ASN162 4.0 40.2 1.0
O1 A:2741324 4.2 35.9 1.0
C21 A:2741324 4.5 31.1 1.0
C A:GLY161 4.8 38.5 1.0
OD2 A:ASP175 5.0 43.4 1.0

Calcium binding site 3 out of 7 in 2j7t

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Calcium binding site 3 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1318

b:40.7
occ:1.00
 OE2 A:GLU316 2.2 42.4 1.0
O A:HOH2125 2.4 29.8 1.0
O A:HOH2127 2.5 38.3 1.0
O A:HOH2128 2.6 38.4 1.0
CD A:GLU316 3.3 43.8 1.0
OE1 A:GLU313 3.8 46.7 1.0
CA A:CA1319 4.1 52.3 1.0
CG A:GLU316 4.1 43.9 1.0
OE1 A:GLU316 4.2 48.1 1.0
O A:HOH2118 4.7 26.5 1.0
CD A:GLU313 4.8 43.7 1.0

Calcium binding site 4 out of 7 in 2j7t

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Calcium binding site 4 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1319

b:52.3
occ:1.00
 OE2 A:GLU313 2.4 45.9 1.0
OE1 A:GLU316 2.7 48.1 1.0
OE2 A:GLU316 2.9 42.4 1.0
OE1 A:GLU313 2.9 46.7 1.0
CD A:GLU313 3.0 43.7 1.0
O A:HOH2128 3.0 38.4 1.0
CD A:GLU316 3.1 43.8 1.0
CA A:CA1318 4.1 40.7 1.0
O A:HOH2125 4.2 29.8 1.0
O A:HOH2126 4.3 44.1 1.0
CG A:GLU313 4.5 40.0 1.0
CG A:GLU316 4.6 43.9 1.0
O A:HOH2123 4.8 23.4 0.5

Calcium binding site 5 out of 7 in 2j7t

Go back to Calcium Binding Sites List in 2j7t
Calcium binding site 5 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1320

b:77.2
occ:1.00
 O A:HOH2080 2.5 57.8 1.0
OE1 A:GLU234 2.8 54.3 1.0
OE2 A:GLU234 2.8 53.9 1.0
O A:HOH2078 2.8 47.6 1.0
O A:HOH2079 3.0 53.3 1.0
O A:HOH2029 3.1 50.5 1.0
CD A:GLU234 3.1 50.8 1.0
CG A:GLU234 4.7 46.2 1.0

Calcium binding site 6 out of 7 in 2j7t

Go back to Calcium Binding Sites List in 2j7t
Calcium binding site 6 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1321

b:62.5
occ:1.00
 O A:HOH2108 2.1 52.4 1.0
O A:HOH2039 2.2 51.5 1.0
NE2 A:GLN135 3.5 40.1 1.0
OG A:SER264 4.0 37.0 1.0
OE1 A:GLU266 4.0 40.1 1.0
OE1 A:GLU131 4.1 41.8 1.0
CD A:GLN135 4.3 40.4 1.0
CB A:SER264 4.3 37.2 1.0
CD A:GLU266 4.3 39.8 1.0
CB A:GLU266 4.4 37.1 1.0
O A:HOH2042 4.4 46.3 1.0
OE1 A:GLN135 4.5 40.0 1.0
CG A:GLU266 4.5 38.0 1.0
O A:PRO292 5.0 37.8 1.0

Calcium binding site 7 out of 7 in 2j7t

Go back to Calcium Binding Sites List in 2j7t
Calcium binding site 7 out of 7 in the Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Human Serine Threonine Kinase-10 Bound to SU11274 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1322

b:50.5
occ:1.00
 O A:HOH2126 2.2 44.1 1.0
O A:HOH2028 2.3 44.9 1.0
O A:GLU124 2.7 39.9 1.0
OE2 A:GLU313 3.2 45.9 1.0
O A:HOH2123 3.3 23.4 0.5
OE2 A:GLU124 3.3 49.7 1.0
CD A:GLU124 3.5 46.7 1.0
C A:GLU124 3.7 40.8 1.0
OE1 A:GLU124 3.7 48.2 1.0
CD A:GLU313 4.1 43.7 1.0
CG A:GLU313 4.1 40.0 1.0
CA A:GLU124 4.1 41.0 1.0
CG A:GLU124 4.4 44.1 1.0
O A:LEU123 4.7 39.2 1.0
O A:HOH2124 4.8 22.3 0.5
CB A:GLU124 4.8 41.2 1.0
N A:LEU125 4.9 41.0 1.0

Reference:

A.C.W.Pike, P.Rellos, F.H.Niesen, A.Turnbull, A.W.Oliver, S.A.Parker, B.E.Turk, L.H.Pearl, S.Knapp. Activation Segment Dimerization: A Mechanism For Kinase Autophosphorylation of Non-Consensus Sites. Embo J. V. 27 704 2008.
ISSN: ISSN 0261-4189
PubMed: 18239682
DOI: 10.1038/EMBOJ.2008.8
Page generated: Fri Jul 12 13:31:27 2024

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