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Calcium in the structure of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) in Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic Acid) (pdb 2jbj)

The binding sites of Calcium atom in the structure of Membrane-Bound Glutamate Carboxypeptidase II (Gcpii) in Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic Acid) (pdb code 2jbj). This binding sites where shown with 5.0 Angstroms radius around Calcium atom.
The 2jbj structure was solved by J.R.MESTERS, K.HENNING, R.HILGENFELD, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)101.0-2.2
Space groupI222
a (A)100.755
b (A)130.982
c (A)159.611
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)19.2
Rfree (%)23.8

Calcium Binding Sites:

Calcium binding site 1 out of 1 in 2jbj

Calcium binding site 1 out of 1 in 2jbj
Click to enlarge
stereopicture of Calcium binding site 1 out of 1 in 2jbj
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Calcium in the PDB 2jbj. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Calcium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ala264, A: Asp266, A: Thr269, A: Pro270, A: Gly271, A: Tyr272, A: Pro273, A: Ala274, A: Glu433, A: Glu436, A: Hoh2119,

conact list:

AtomAtomDistance (A)
CaO A:Ala2644.53
CaO A:Asp2664.42
CaN A:Asp2664.49
CaCB A:Asp2664.23
CaOD2 A:Asp2664.82
CaCA A:Asp2664.78
CaO A:Thr2692.33
CaN A:Thr2694.74
CaCB A:Thr2693.45
CaCG2 A:Thr2694.77
CaOG1 A:Thr2692.56
CaC A:Thr2693.34
CaCA A:Thr2694.03
CaN A:Pro2704.32
CaC A:Pro2704.77
CaCA A:Pro2704.52
CaN A:Gly2714.56
CaO A:Tyr2722.37
CaN A:Tyr2724.08
CaC A:Tyr2723.44
CaCA A:Tyr2724.43
CaN A:Pro2734.20
CaC A:Pro2734.36
CaCA A:Pro2734.16
CaN A:Ala2744.13
CaCB A:Ala2744.90
CaCA A:Ala2745.00
CaOE1 A:Glu4332.43
CaCB A:Glu4334.97
CaOE2 A:Glu4332.44
CaCD A:Glu4332.76
CaCG A:Glu4334.22
CaCA A:Glu4334.93
CaOE1 A:Glu4363.89
CaOE2 A:Glu4362.43
CaCD A:Glu4363.48
CaCG A:Glu4364.71
CaO A:Hoh21192.31

interactive model:

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