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Calcium in PDB 2jll: Crystal Structure of NCAM2 Igiv-FN3II

Protein crystallography data

The structure of Crystal Structure of NCAM2 Igiv-FN3II, PDB code: 2jll was solved by N.Kulahin, K.Rasmussen, O.Kristensen, J.Kastrup, V.Berezin, E.Bock, P.Walmod, M.Gajhede, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.791 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 151.740, 33.800, 97.670, 90.00, 98.36, 90.00
R / Rfree (%) 21.56 / 26.85

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of NCAM2 Igiv-FN3II (pdb code 2jll). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of NCAM2 Igiv-FN3II, PDB code: 2jll:

Calcium binding site 1 out of 1 in 2jll

Go back to Calcium Binding Sites List in 2jll
Calcium binding site 1 out of 1 in the Crystal Structure of NCAM2 Igiv-FN3II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of NCAM2 Igiv-FN3II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1695

b:45.2
occ:1.00
O A:HOH2084 2.4 43.5 1.0
O3 A:GOL1694 2.4 57.9 1.0
OD2 A:ASP494 2.4 39.5 1.0
O A:HOH2147 2.4 37.1 1.0
O1 A:GOL1694 2.4 51.2 1.0
C3 A:GOL1694 2.9 54.5 1.0
C1 A:GOL1694 3.4 57.0 1.0
CG A:ASP494 3.4 35.6 1.0
C2 A:GOL1694 3.7 62.7 1.0
OD1 A:ASP494 3.8 32.1 1.0
O A:HOH2117 4.3 40.7 1.0
O2 A:GOL1694 4.4 62.3 1.0
OD2 A:ASP579 4.5 40.1 1.0
O A:VAL495 4.7 22.1 1.0
CB A:ASP494 4.8 34.1 1.0
O A:HOH2085 4.9 39.6 1.0

Reference:

N.Kulahin, O.Kristensen, K.K.Rasmussen, L.Olsen, P.Rydberg, B.Vestergaard, J.S.Kastrup, V.Berezin, E.Bock, P.S.Walmod, M.Gajhede. Structural Model and Trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule. Structure V. 19 203 2011.
ISSN: ISSN 0969-2126
PubMed: 21300289
DOI: 10.1016/J.STR.2010.12.014
Page generated: Fri Jul 12 13:48:25 2024

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