Calcium in PDB 2jsd: Solution Structure of MMP20 Complexed with Nngh

The structure of Solution Structure of MMP20 Complexed with Nngh also contains other interesting chemical elements:

Zinc

(Zn)

40 atoms

The binding sites of Calcium atom in the Solution Structure of MMP20 Complexed with Nngh (pdb code 2jsd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of MMP20 Complexed with Nngh, PDB code: 2jsd:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of MMP20 Complexed with Nngh


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of MMP20 Complexed with Nngh within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca273 b:0.0 occ:1.00 OD2 A:ASP206 2.5 0.0 1.0 O A:THR188 2.5 0.0 1.0 OE1 A:GLU209 2.6 0.0 1.0 OE2 A:GLU209 2.6 0.0 1.0 O A:ARG186 2.6 0.0 1.0 OD1 A:ASP183 2.6 0.0 1.0 O A:GLY184 2.7 0.0 1.0 CD A:GLU209 2.9 0.0 1.0 CG A:ASP206 3.5 0.0 1.0 C A:THR188 3.5 0.0 1.0 HB3 A:ASP206 3.6 0.0 1.0 C A:ARG186 3.6 0.0 1.0 HB2 A:ASP206 3.7 0.0 1.0 HA A:LEU189 3.7 0.0 1.0 CG A:ASP183 3.8 0.0 1.0 CB A:ASP206 3.8 0.0 1.0 C A:GLY184 3.8 0.0 1.0 HD22 A:LEU189 3.8 0.0 1.0 H A:GLY184 3.9 0.0 1.0 H A:ARG186 3.9 0.0 1.0 H A:ASP183 3.9 0.0 1.0 HB A:THR188 3.9 0.0 1.0 N A:GLY184 4.1 0.0 1.0 N A:THR188 4.1 0.0 1.0 H A:THR188 4.1 0.0 1.0 CG A:GLU209 4.1 0.0 1.0 N A:ARG186 4.1 0.0 1.0 HG2 A:GLU209 4.2 0.0 1.0 HB3 A:GLU209 4.2 0.0 1.0 CA A:THR188 4.3 0.0 1.0 HD1 A:PHE182 4.3 0.0 1.0 N A:LEU189 4.3 0.0 1.0 CA A:ARG186 4.3 0.0 1.0 HA A:ARG186 4.4 0.0 1.0 C A:GLY187 4.4 0.0 1.0 OD2 A:ASP183 4.4 0.0 1.0 OD1 A:ASP206 4.5 0.0 1.0 CA A:LEU189 4.5 0.0 1.0 CA A:GLY184 4.5 0.0 1.0 N A:GLY187 4.5 0.0 1.0 C A:ASP183 4.6 0.0 1.0 CB A:THR188 4.6 0.0 1.0 HB3 A:PHE182 4.7 0.0 1.0 C A:PRO185 4.7 0.0 1.0 CB A:GLU209 4.8 0.0 1.0 N A:ASP183 4.8 0.0 1.0 N A:PRO185 4.8 0.0 1.0 O A:GLY187 4.8 0.0 1.0 CD2 A:LEU189 4.8 0.0 1.0 HD21 A:LEU189 4.9 0.0 1.0 HB1 A:ALA208 4.9 0.0 1.0 CA A:GLY187 4.9 0.0 1.0 HG3 A:GLU209 4.9 0.0 1.0 HA A:PRO185 4.9 0.0 1.0 HA3 A:GLY187 4.9 0.0 1.0 HA2 A:GLY184 4.9 0.0 1.0 CB A:ASP183 5.0 0.0 1.0 CA A:ASP183 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of MMP20 Complexed with Nngh


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of MMP20 Complexed with Nngh within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca274 b:0.0 occ:1.00 OD1 A:ASP202 2.6 0.0 1.0 O A:GLY198 2.6 0.0 1.0 OE2 A:GLU164 2.6 0.0 1.0 O A:GLU197 2.6 0.0 1.0 O A:ALA165 2.7 0.0 1.0 O A:ASP166 2.7 0.0 1.0 OD2 A:ASP202 3.0 0.0 1.0 O A:GLY200 3.0 0.0 1.0 CG A:ASP202 3.1 0.0 1.0 C A:ASP166 3.5 0.0 1.0 HA A:ASP166 3.6 0.0 1.0 C A:GLY198 3.7 0.0 1.0 C A:GLU197 3.7 0.0 1.0 CD A:GLU164 3.8 0.0 1.0 C A:ALA165 3.8 0.0 1.0 H A:MET168 4.0 0.0 1.0 CA A:ASP166 4.0 0.0 1.0 HB2 A:MET168 4.1 0.0 1.0 HA2 A:GLY198 4.1 0.0 1.0 C A:GLY200 4.2 0.0 1.0 CA A:GLY198 4.3 0.0 1.0 N A:GLY198 4.4 0.0 1.0 N A:ASP166 4.4 0.0 1.0 N A:ILE167 4.4 0.0 1.0 HA A:ILE167 4.4 0.0 1.0 HG3 A:MET168 4.4 0.0 1.0 H A:ASP202 4.5 0.0 1.0 OE1 A:GLU164 4.5 0.0 1.0 CB A:ASP202 4.5 0.0 1.0 HG2 A:GLU164 4.6 0.0 1.0 N A:MET168 4.6 0.0 1.0 HA3 A:GLY201 4.7 0.0 1.0 HA A:LEU199 4.7 0.0 1.0 C A:LEU199 4.7 0.0 1.0 N A:ASP202 4.7 0.0 1.0 O A:LEU199 4.7 0.0 1.0 HA A:GLU197 4.7 0.0 1.0 N A:LEU199 4.7 0.0 1.0 CG A:GLU164 4.8 0.0 1.0 CA A:ILE167 4.8 0.0 1.0 CA A:GLU197 4.9 0.0 1.0 HB2 A:ASP202 4.9 0.0 1.0 N A:GLY200 4.9 0.0 1.0 CA A:LEU199 5.0 0.0 1.0

Y.Arendt, L.Banci, I.Bertini, F.Cantini, R.Cozzi, R.Del Conte, L.Gonnelli. Catalytic Domain of MMP20 (Enamelysin) - the uc(Nmr) Structure of A New Matrix Metalloproteinase. Febs Lett. V. 581 4723 2007.
ISSN: ISSN 0014-5793
PubMed: 17869250
DOI: 10.1016/J.FEBSLET.2007.08.069