Atomistry » Calcium » PDB 2jq6-2ksp » 2jt5
Atomistry »
  Calcium »
    PDB 2jq6-2ksp »
      2jt5 »

Calcium in PDB 2jt5: Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)

Enzymatic activity of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)

All present enzymatic activity of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88):
3.4.24.17;

Other elements in 2jt5:

The structure of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) (pdb code 2jt5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88), PDB code: 2jt5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2jt5

Go back to Calcium Binding Sites List in 2jt5
Calcium binding site 1 out of 2 in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca258

b:0.0
occ:1.00
OE2 A:GLU184 2.3 0.0 1.0
H A:GLY161 2.3 0.0 1.0
O A:VAL163 2.3 0.0 1.0
HD22 A:LEU164 2.5 0.0 1.0
O A:GLY159 2.5 0.0 1.0
OD1 A:ASP158 2.5 0.0 1.0
OD2 A:ASP158 2.6 0.0 1.0
N A:GLY161 2.8 0.0 1.0
O A:GLY161 2.9 0.0 1.0
CG A:ASP158 2.9 0.0 1.0
CD A:GLU184 3.2 0.0 1.0
C A:GLY161 3.3 0.0 1.0
CA A:GLY161 3.3 0.0 1.0
HA3 A:GLY161 3.3 0.0 1.0
OE1 A:GLU184 3.4 0.0 1.0
C A:VAL163 3.5 0.0 1.0
CD2 A:LEU164 3.5 0.0 1.0
HA A:LEU164 3.6 0.0 1.0
C A:GLY159 3.7 0.0 1.0
HA A:PRO160 3.7 0.0 1.0
C A:PRO160 3.7 0.0 1.0
H A:VAL163 3.8 0.0 1.0
OD2 A:ASP181 3.9 0.0 1.0
HD21 A:LEU164 3.9 0.0 1.0
HD23 A:LEU164 3.9 0.0 1.0
CA A:PRO160 4.1 0.0 1.0
N A:VAL163 4.1 0.0 1.0
N A:ASN162 4.3 0.0 1.0
N A:PRO160 4.3 0.0 1.0
HA2 A:GLY161 4.4 0.0 1.0
CA A:VAL163 4.4 0.0 1.0
N A:LEU164 4.4 0.0 1.0
CA A:LEU164 4.4 0.0 1.0
CB A:ASP158 4.4 0.0 1.0
HB A:VAL163 4.5 0.0 1.0
CG A:GLU184 4.5 0.0 1.0
HG3 A:GLU184 4.5 0.0 1.0
CG A:LEU164 4.6 0.0 1.0
HG A:LEU164 4.6 0.0 1.0
N A:GLY159 4.7 0.0 1.0
C A:ASP158 4.7 0.0 1.0
O A:PRO160 4.7 0.0 1.0
HB3 A:LEU164 4.7 0.0 1.0
C A:ASN162 4.7 0.0 1.0
CA A:GLY159 4.8 0.0 1.0
CB A:LEU164 4.8 0.0 1.0
O A:ASP158 4.8 0.0 1.0
HB2 A:ASP158 4.8 0.0 1.0
H A:ASN162 4.9 0.0 1.0
H A:ASP158 4.9 0.0 1.0
HB2 A:ASP181 4.9 0.0 1.0
H A:GLY159 4.9 0.0 1.0
CG A:ASP181 5.0 0.0 1.0
HB3 A:ASP181 5.0 0.0 1.0
HB3 A:ASP158 5.0 0.0 1.0
HB2 A:GLU184 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 2jt5

Go back to Calcium Binding Sites List in 2jt5
Calcium binding site 2 out of 2 in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca259

b:0.0
occ:1.00
OD2 A:ASP177 2.4 0.0 1.0
OE2 A:GLU139 2.5 0.0 1.0
O A:ASN175 2.5 0.0 1.0
OD1 A:ASP177 2.6 0.0 1.0
CG A:ASP177 2.8 0.0 1.0
O A:ASP141 2.9 0.0 1.0
O A:GLY173 3.0 0.0 1.0
C A:ASN175 3.6 0.0 1.0
H A:ASN175 3.7 0.0 1.0
CD A:GLU139 3.7 0.0 1.0
HB3 A:ASN175 3.7 0.0 1.0
N A:ASN175 3.8 0.0 1.0
O A:ALA140 3.9 0.0 1.0
C A:ASP141 4.0 0.0 1.0
HA A:ILE174 4.1 0.0 1.0
CA A:ASN175 4.1 0.0 1.0
HA A:ASP141 4.2 0.0 1.0
C A:GLY173 4.2 0.0 1.0
C A:ILE174 4.3 0.0 1.0
HB3 A:MET143 4.3 0.0 1.0
OE1 A:GLU139 4.3 0.0 1.0
CB A:ASP177 4.3 0.0 1.0
H A:MET143 4.3 0.0 1.0
CB A:ASN175 4.4 0.0 1.0
O A:GLY176 4.6 0.0 1.0
C A:GLY176 4.6 0.0 1.0
HA A:ILE142 4.6 0.0 1.0
CA A:ILE174 4.6 0.0 1.0
HE1 A:MET143 4.7 0.0 1.0
N A:GLY176 4.7 0.0 1.0
CA A:ASP141 4.7 0.0 1.0
HB2 A:ASP177 4.7 0.0 1.0
HG2 A:GLU139 4.7 0.0 1.0
HB2 A:MET143 4.7 0.0 1.0
N A:ASP177 4.8 0.0 1.0
CG A:GLU139 4.8 0.0 1.0
HB3 A:ASP177 4.9 0.0 1.0
O A:ILE174 4.9 0.0 1.0
N A:ILE174 4.9 0.0 1.0
HD21 A:ASN175 4.9 0.0 1.0
N A:MET143 4.9 0.0 1.0
HA A:ASP177 5.0 0.0 1.0

Reference:

L.A.Alcaraz, L.Banci, I.Bertini, F.Cantini, A.Donaire, L.Gonnelli. Matrix Metalloproteinase-Inhibitor Interaction: the Solution Structure of the Catalytic Domain of Human Matrix Metalloproteinase-3 with Different Inhibitors J.Biol.Inorg.Chem. V. 12 1197 2007.
ISSN: ISSN 0949-8257
PubMed: 17710450
DOI: 10.1007/S00775-007-0288-9
Page generated: Sat Dec 12 03:42:37 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy