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Calcium in PDB 2jt5: Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)

Enzymatic activity of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)

All present enzymatic activity of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88):
3.4.24.17;

Other elements in 2jt5:

The structure of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) (pdb code 2jt5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88), PDB code: 2jt5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2jt5

Go back to Calcium Binding Sites List in 2jt5
Calcium binding site 1 out of 2 in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca258

b:0.0
occ:1.00
OE2 A:GLU184 2.3 0.0 1.0
H A:GLY161 2.3 0.0 1.0
O A:VAL163 2.3 0.0 1.0
HD22 A:LEU164 2.5 0.0 1.0
O A:GLY159 2.5 0.0 1.0
OD1 A:ASP158 2.5 0.0 1.0
OD2 A:ASP158 2.6 0.0 1.0
N A:GLY161 2.8 0.0 1.0
O A:GLY161 2.9 0.0 1.0
CG A:ASP158 2.9 0.0 1.0
CD A:GLU184 3.2 0.0 1.0
C A:GLY161 3.3 0.0 1.0
CA A:GLY161 3.3 0.0 1.0
HA3 A:GLY161 3.3 0.0 1.0
OE1 A:GLU184 3.4 0.0 1.0
C A:VAL163 3.5 0.0 1.0
CD2 A:LEU164 3.5 0.0 1.0
HA A:LEU164 3.6 0.0 1.0
C A:GLY159 3.7 0.0 1.0
HA A:PRO160 3.7 0.0 1.0
C A:PRO160 3.7 0.0 1.0
H A:VAL163 3.8 0.0 1.0
OD2 A:ASP181 3.9 0.0 1.0
HD21 A:LEU164 3.9 0.0 1.0
HD23 A:LEU164 3.9 0.0 1.0
CA A:PRO160 4.1 0.0 1.0
N A:VAL163 4.1 0.0 1.0
N A:ASN162 4.3 0.0 1.0
N A:PRO160 4.3 0.0 1.0
HA2 A:GLY161 4.4 0.0 1.0
CA A:VAL163 4.4 0.0 1.0
N A:LEU164 4.4 0.0 1.0
CA A:LEU164 4.4 0.0 1.0
CB A:ASP158 4.4 0.0 1.0
HB A:VAL163 4.5 0.0 1.0
CG A:GLU184 4.5 0.0 1.0
HG3 A:GLU184 4.5 0.0 1.0
CG A:LEU164 4.6 0.0 1.0
HG A:LEU164 4.6 0.0 1.0
N A:GLY159 4.7 0.0 1.0
C A:ASP158 4.7 0.0 1.0
O A:PRO160 4.7 0.0 1.0
HB3 A:LEU164 4.7 0.0 1.0
C A:ASN162 4.7 0.0 1.0
CA A:GLY159 4.8 0.0 1.0
CB A:LEU164 4.8 0.0 1.0
O A:ASP158 4.8 0.0 1.0
HB2 A:ASP158 4.8 0.0 1.0
H A:ASN162 4.9 0.0 1.0
H A:ASP158 4.9 0.0 1.0
HB2 A:ASP181 4.9 0.0 1.0
H A:GLY159 4.9 0.0 1.0
CG A:ASP181 5.0 0.0 1.0
HB3 A:ASP181 5.0 0.0 1.0
HB3 A:ASP158 5.0 0.0 1.0
HB2 A:GLU184 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 2jt5

Go back to Calcium Binding Sites List in 2jt5
Calcium binding site 2 out of 2 in the Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of Matrix Metalloproteinase 3 (Mmp-3) in the Presence of N-Hydroxy-2-[N-(2-Hydroxyethyl)Biphenyl-4- Sulfonamide] Hydroxamic Acid (MLC88) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca259

b:0.0
occ:1.00
OD2 A:ASP177 2.4 0.0 1.0
OE2 A:GLU139 2.5 0.0 1.0
O A:ASN175 2.5 0.0 1.0
OD1 A:ASP177 2.6 0.0 1.0
CG A:ASP177 2.8 0.0 1.0
O A:ASP141 2.9 0.0 1.0
O A:GLY173 3.0 0.0 1.0
C A:ASN175 3.6 0.0 1.0
H A:ASN175 3.7 0.0 1.0
CD A:GLU139 3.7 0.0 1.0
HB3 A:ASN175 3.7 0.0 1.0
N A:ASN175 3.8 0.0 1.0
O A:ALA140 3.9 0.0 1.0
C A:ASP141 4.0 0.0 1.0
HA A:ILE174 4.1 0.0 1.0
CA A:ASN175 4.1 0.0 1.0
HA A:ASP141 4.2 0.0 1.0
C A:GLY173 4.2 0.0 1.0
C A:ILE174 4.3 0.0 1.0
HB3 A:MET143 4.3 0.0 1.0
OE1 A:GLU139 4.3 0.0 1.0
CB A:ASP177 4.3 0.0 1.0
H A:MET143 4.3 0.0 1.0
CB A:ASN175 4.4 0.0 1.0
O A:GLY176 4.6 0.0 1.0
C A:GLY176 4.6 0.0 1.0
HA A:ILE142 4.6 0.0 1.0
CA A:ILE174 4.6 0.0 1.0
HE1 A:MET143 4.7 0.0 1.0
N A:GLY176 4.7 0.0 1.0
CA A:ASP141 4.7 0.0 1.0
HB2 A:ASP177 4.7 0.0 1.0
HG2 A:GLU139 4.7 0.0 1.0
HB2 A:MET143 4.7 0.0 1.0
N A:ASP177 4.8 0.0 1.0
CG A:GLU139 4.8 0.0 1.0
HB3 A:ASP177 4.9 0.0 1.0
O A:ILE174 4.9 0.0 1.0
N A:ILE174 4.9 0.0 1.0
HD21 A:ASN175 4.9 0.0 1.0
N A:MET143 4.9 0.0 1.0
HA A:ASP177 5.0 0.0 1.0

Reference:

L.A.Alcaraz, L.Banci, I.Bertini, F.Cantini, A.Donaire, L.Gonnelli. Matrix Metalloproteinase-Inhibitor Interaction: the Solution Structure of the Catalytic Domain of Human Matrix Metalloproteinase-3 with Different Inhibitors J.Biol.Inorg.Chem. V. 12 1197 2007.
ISSN: ISSN 0949-8257
PubMed: 17710450
DOI: 10.1007/S00775-007-0288-9
Page generated: Fri Jul 12 13:51:04 2024

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