Calcium in PDB 2ju0: Structure of Yeast Frequenin Bound to Pdtins 4-Kinase

All present enzymatic activity of Structure of Yeast Frequenin Bound to Pdtins 4-Kinase:
2.7.1.67;

The binding sites of Calcium atom in the Structure of Yeast Frequenin Bound to Pdtins 4-Kinase (pdb code 2ju0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of Yeast Frequenin Bound to Pdtins 4-Kinase, PDB code: 2ju0:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of Yeast Frequenin Bound to Pdtins 4-Kinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Yeast Frequenin Bound to Pdtins 4-Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca500 b:0.0 occ:1.00 OD2 A:ASP73 2.1 0.0 1.0 OD1 A:ASN77 2.5 0.0 1.0 OE2 A:GLU84 2.5 0.0 1.0 OD2 A:ASP75 2.5 0.0 1.0 OD1 A:ASP73 2.5 0.0 1.0 OE1 A:GLU84 2.5 0.0 1.0 O A:PHE79 2.5 0.0 1.0 CG A:ASP73 2.6 0.0 1.0 HD22 A:ASN77 2.6 0.0 1.0 CD A:GLU84 2.8 0.0 1.0 HB2 A:ASP75 3.0 0.0 1.0 HD1 A:HIS81 3.0 0.0 1.0 HA A:ILE80 3.1 0.0 1.0 ND2 A:ASN77 3.1 0.0 1.0 CG A:ASN77 3.1 0.0 1.0 H A:HIS81 3.3 0.0 1.0 CG A:ASP75 3.4 0.0 1.0 H A:ASN77 3.4 0.0 1.0 CB A:ASP75 3.7 0.0 1.0 C A:PHE79 3.7 0.0 1.0 ND1 A:HIS81 3.8 0.0 1.0 H A:ASP75 3.9 0.0 1.0 H A:ASN76 3.9 0.0 1.0 HD21 A:ASN77 4.0 0.0 1.0 CA A:ILE80 4.0 0.0 1.0 CB A:ASP73 4.1 0.0 1.0 N A:HIS81 4.1 0.0 1.0 H A:PHE79 4.2 0.0 1.0 HA A:ASP73 4.3 0.0 1.0 CG A:GLU84 4.3 0.0 1.0 HE1 A:HIS81 4.3 0.0 1.0 N A:ILE80 4.3 0.0 1.0 N A:ASN77 4.4 0.0 1.0 HB2 A:HIS81 4.4 0.0 1.0 N A:ASN76 4.4 0.0 1.0 HB3 A:ASP75 4.4 0.0 1.0 HB2 A:ASP73 4.4 0.0 1.0 OD1 A:ASP75 4.5 0.0 1.0 CB A:ASN77 4.5 0.0 1.0 CE1 A:HIS81 4.5 0.0 1.0 N A:ASP75 4.5 0.0 1.0 CA A:ASP75 4.6 0.0 1.0 C A:ILE80 4.6 0.0 1.0 HB2 A:PHE79 4.7 0.0 1.0 HB3 A:ASN77 4.7 0.0 1.0 CA A:ASP73 4.7 0.0 1.0 HB3 A:ASP73 4.7 0.0 1.0 HG2 A:GLU84 4.7 0.0 1.0 HG3 A:GLU84 4.7 0.0 1.0 CG A:HIS81 4.7 0.0 1.0 HG13 A:ILE80 4.8 0.0 1.0 HG12 A:ILE80 4.8 0.0 1.0 C A:ASP75 4.8 0.0 1.0 CA A:PHE79 4.8 0.0 1.0 N A:PHE79 4.8 0.0 1.0 HB2 A:GLU84 4.9 0.0 1.0 H A:GLY78 5.0 0.0 1.0 CB A:HIS81 5.0 0.0 1.0

Calcium binding site 2 out of 3 in the Structure of Yeast Frequenin Bound to Pdtins 4-Kinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Yeast Frequenin Bound to Pdtins 4-Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:0.0 occ:1.00 O A:TYR115 1.7 0.0 1.0 HA A:ILE116 2.3 0.0 1.0 C A:ILE116 2.5 0.0 1.0 OE1 A:GLU120 2.5 0.0 1.0 OG1 A:THR117 2.5 0.0 1.0 C A:TYR115 2.6 0.0 1.0 OE2 A:GLU120 2.6 0.0 1.0 OD1 A:ASP109 2.6 0.0 1.0 CA A:ILE116 2.7 0.0 1.0 OD1 A:ASN111 2.7 0.0 1.0 OD2 A:ASP113 2.8 0.0 1.0 CD A:GLU120 2.9 0.0 1.0 N A:THR117 2.9 0.0 1.0 N A:ILE116 3.0 0.0 1.0 O A:ILE116 3.0 0.0 1.0 HG1 A:THR117 3.0 0.0 1.0 H A:THR117 3.1 0.0 1.0 CB A:THR117 3.6 0.0 1.0 CG A:ASP109 3.6 0.0 1.0 HB2 A:TYR115 3.7 0.0 1.0 CA A:THR117 3.8 0.0 1.0 CG A:ASN111 3.8 0.0 1.0 CG A:ASP113 3.8 0.0 1.0 HB A:THR117 3.8 0.0 1.0 H A:ILE116 3.9 0.0 1.0 CA A:TYR115 3.9 0.0 1.0 HD22 A:ASN111 3.9 0.0 1.0 HB3 A:TYR163 4.0 0.0 1.0 OD2 A:ASP109 4.1 0.0 1.0 HA A:THR117 4.1 0.0 1.0 HG22 A:ILE116 4.1 0.0 1.0 CB A:ILE116 4.1 0.0 1.0 HB2 A:TYR163 4.2 0.0 1.0 CB A:TYR115 4.2 0.0 1.0 OD1 A:ASP113 4.2 0.0 1.0 HA A:ASP109 4.2 0.0 1.0 H A:TYR115 4.3 0.0 1.0 ND2 A:ASN111 4.3 0.0 1.0 CG A:GLU120 4.4 0.0 1.0 HB3 A:TYR115 4.4 0.0 1.0 H A:ASP113 4.5 0.0 1.0 N A:TYR115 4.5 0.0 1.0 HB2 A:GLU120 4.6 0.0 1.0 CB A:TYR163 4.6 0.0 1.0 HA A:TYR115 4.7 0.0 1.0 CG2 A:ILE116 4.7 0.0 1.0 HG13 A:ILE116 4.7 0.0 1.0 HB A:ILE116 4.7 0.0 1.0 CB A:ASP109 4.8 0.0 1.0 HG3 A:GLU120 4.8 0.0 1.0 CG2 A:THR117 4.8 0.0 1.0 HG21 A:THR117 4.8 0.0 1.0 HG2 A:GLU120 4.9 0.0 1.0 CG1 A:ILE116 4.9 0.0 1.0 HB2 A:ASN111 4.9 0.0 1.0 HB2 A:ASP109 5.0 0.0 1.0 H A:ASN111 5.0 0.0 1.0 CA A:ASP109 5.0 0.0 1.0

Calcium binding site 3 out of 3 in the Structure of Yeast Frequenin Bound to Pdtins 4-Kinase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Yeast Frequenin Bound to Pdtins 4-Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca502 b:0.0 occ:1.00 OD2 A:ASP161 1.8 0.0 1.0 HG22 A:ILE164 2.2 0.0 1.0 HA A:ILE164 2.3 0.0 1.0 CG A:ASP161 2.4 0.0 1.0 OE1 A:GLU168 2.4 0.0 1.0 O A:TYR163 2.5 0.0 1.0 OD1 A:ASN159 2.5 0.0 1.0 OD1 A:ASP161 2.5 0.0 1.0 OD1 A:ASP157 2.5 0.0 1.0 OE2 A:GLU168 2.5 0.0 1.0 CD A:GLU168 2.8 0.0 1.0 CG2 A:ILE164 3.1 0.0 1.0 CA A:ILE164 3.2 0.0 1.0 CG A:ASP157 3.3 0.0 1.0 HD22 A:ASN159 3.4 0.0 1.0 HG21 A:ILE164 3.4 0.0 1.0 C A:TYR163 3.5 0.0 1.0 CG A:ASN159 3.5 0.0 1.0 OD2 A:ASP157 3.6 0.0 1.0 CB A:ILE164 3.7 0.0 1.0 N A:ILE164 3.8 0.0 1.0 ND2 A:ASN159 3.8 0.0 1.0 CB A:ASP161 3.8 0.0 1.0 H A:THR165 3.9 0.0 1.0 HG23 A:ILE164 3.9 0.0 1.0 H A:ASP161 4.1 0.0 1.0 HB A:ILE164 4.1 0.0 1.0 HB3 A:ASP161 4.2 0.0 1.0 CG A:GLU168 4.2 0.0 1.0 HB2 A:ASP161 4.3 0.0 1.0 C A:ILE164 4.3 0.0 1.0 N A:THR165 4.5 0.0 1.0 HG21 A:THR165 4.5 0.0 1.0 HG3 A:GLU168 4.5 0.0 1.0 HD1 A:TYR163 4.6 0.0 1.0 HG22 A:THR165 4.6 0.0 1.0 CB A:ASP157 4.6 0.0 1.0 HB2 A:ASP157 4.7 0.0 1.0 N A:ASP161 4.7 0.0 1.0 H A:TYR163 4.7 0.0 1.0 H A:ILE164 4.8 0.0 1.0 HD21 A:ASN159 4.8 0.0 1.0 CA A:TYR163 4.8 0.0 1.0 CA A:ASP161 4.8 0.0 1.0 HG2 A:GLU168 4.8 0.0 1.0 CB A:ASN159 4.8 0.0 1.0 HB2 A:ASN159 4.9 0.0 1.0 HB2 A:GLU168 4.9 0.0 1.0 HA A:ASP157 4.9 0.0 1.0 N A:TYR163 5.0 0.0 1.0

T.Strahl, I.G.Huttner, J.D.Lusin, M.Osawa, D.King, J.Thorner, J.B.Ames. Structural Insights Into Activation of Phosphatidylinositol 4-Kinase (PIK1) By Yeast Frequenin (FRQ1). J.Biol.Chem. V. 282 30949 2007.
ISSN: ISSN 0021-9258
PubMed: 17720810
DOI: 10.1074/JBC.M705499200