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Calcium in PDB 2jul: uc(Nmr) Structure of Dream

Calcium Binding Sites:

The binding sites of Calcium atom in the uc(Nmr) Structure of Dream (pdb code 2jul). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the uc(Nmr) Structure of Dream, PDB code: 2jul:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2jul

Go back to Calcium Binding Sites List in 2jul
Calcium binding site 1 out of 2 in the uc(Nmr) Structure of Dream


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Structure of Dream within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:0.0
occ:1.00
OD1 A:ASN177 2.5 0.0 1.0
OE2 A:GLU186 2.5 0.0 1.0
O A:CYS181 2.5 0.0 1.0
OD1 A:ASP175 2.5 0.0 1.0
OE1 A:GLU186 2.5 0.0 1.0
OD2 A:ASP179 2.6 0.0 1.0
CD A:GLU186 2.8 0.0 1.0
OD1 A:ASP179 2.9 0.0 1.0
CG A:ASP179 3.0 0.0 1.0
HD22 A:ASN177 3.1 0.0 1.0
CG A:ASN177 3.4 0.0 1.0
CG A:ASP175 3.6 0.0 1.0
H A:CYS181 3.7 0.0 1.0
ND2 A:ASN177 3.7 0.0 1.0
C A:CYS181 3.7 0.0 1.0
O A:LYS178 3.8 0.0 1.0
HA A:ILE182 3.8 0.0 1.0
OD2 A:ASP175 4.2 0.0 1.0
N A:CYS181 4.2 0.0 1.0
HG22 A:THR183 4.2 0.0 1.0
CG A:GLU186 4.3 0.0 1.0
CA A:CYS181 4.6 0.0 1.0
CB A:ASP179 4.6 0.0 1.0
HG2 A:GLU186 4.6 0.0 1.0
HD21 A:ASN177 4.6 0.0 1.0
N A:ILE182 4.6 0.0 1.0
HA A:ASP175 4.6 0.0 1.0
CA A:ILE182 4.7 0.0 1.0
HB2 A:CYS181 4.7 0.0 1.0
H A:ASN177 4.8 0.0 1.0
HG3 A:GLU186 4.8 0.0 1.0
CB A:ASN177 4.8 0.0 1.0
CB A:ASP175 4.8 0.0 1.0
HB2 A:ASP175 4.9 0.0 1.0
C A:ASP179 4.9 0.0 1.0
HA2 A:GLY180 4.9 0.0 1.0
HB3 A:ASP179 4.9 0.0 1.0
C A:LYS178 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 2jul

Go back to Calcium Binding Sites List in 2jul
Calcium binding site 2 out of 2 in the uc(Nmr) Structure of Dream


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Structure of Dream within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:0.0
occ:1.00
OD1 A:ASP223 2.5 0.0 1.0
OD1 A:ASP227 2.5 0.0 1.0
OD1 A:ASN225 2.5 0.0 1.0
OE1 A:GLU234 2.6 0.0 1.0
H A:ARG224 2.6 0.0 1.0
OE2 A:GLU234 2.7 0.0 1.0
HA A:ASP223 2.8 0.0 1.0
CG A:ASP223 2.8 0.0 1.0
O A:GLY228 2.8 0.0 1.0
O A:VAL229 2.8 0.0 1.0
CD A:GLU234 2.9 0.0 1.0
C A:GLY228 3.0 0.0 1.0
OD2 A:ASP223 3.1 0.0 1.0
C A:VAL229 3.1 0.0 1.0
HA A:VAL230 3.2 0.0 1.0
N A:VAL229 3.5 0.0 1.0
N A:ARG224 3.5 0.0 1.0
CG A:ASP227 3.5 0.0 1.0
CA A:ASP223 3.6 0.0 1.0
N A:VAL230 3.6 0.0 1.0
H A:GLY228 3.7 0.0 1.0
HA2 A:GLY228 3.7 0.0 1.0
CG A:ASN225 3.7 0.0 1.0
CA A:GLY228 3.7 0.0 1.0
N A:GLY228 3.7 0.0 1.0
CA A:VAL229 3.8 0.0 1.0
HD22 A:ASN225 3.8 0.0 1.0
CB A:ASP223 3.8 0.0 1.0
OD2 A:ASP227 3.9 0.0 1.0
CA A:VAL230 3.9 0.0 1.0
C A:ASP223 4.0 0.0 1.0
H A:VAL229 4.0 0.0 1.0
HA A:VAL229 4.0 0.0 1.0
O A:ASN225 4.1 0.0 1.0
H A:ASN225 4.1 0.0 1.0
ND2 A:ASN225 4.2 0.0 1.0
HB A:VAL230 4.2 0.0 1.0
H A:VAL230 4.2 0.0 1.0
N A:ASN225 4.3 0.0 1.0
HB2 A:ASP223 4.5 0.0 1.0
CG A:GLU234 4.5 0.0 1.0
C A:ASP227 4.5 0.0 1.0
HB3 A:ASP223 4.6 0.0 1.0
CB A:VAL230 4.6 0.0 1.0
HZ A:PHE219 4.6 0.0 1.0
C A:ARG224 4.6 0.0 1.0
CA A:ARG224 4.6 0.0 1.0
HG13 A:VAL230 4.7 0.0 1.0
HA3 A:GLY228 4.7 0.0 1.0
CB A:ASP227 4.8 0.0 1.0
C A:ASN225 4.8 0.0 1.0
N A:ASP223 4.8 0.0 1.0
HG2 A:GLU234 4.9 0.0 1.0
CB A:ASN225 4.9 0.0 1.0
CA A:ASN225 5.0 0.0 1.0
HB2 A:GLU234 5.0 0.0 1.0
HB3 A:GLU234 5.0 0.0 1.0
CZ A:PHE219 5.0 0.0 1.0

Reference:

J.D.Lusin, M.Vanarotti, C.Li, A.Valiveti, J.B.Ames. uc(Nmr) Structure of Dream: Implications For Ca(2+)-Dependent Dna Binding and Protein Dimerization. Biochemistry V. 47 2252 2008.
ISSN: ISSN 0006-2960
PubMed: 18201103
DOI: 10.1021/BI7017267
Page generated: Sat Dec 12 03:42:44 2020

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