Calcium in PDB 2k0j: Solution Structure of Cam Complexed to DRP1P

The structure of Solution Structure of Cam Complexed to DRP1P also contains other interesting chemical elements:

Lanthanum

(La)

1 atom

The binding sites of Calcium atom in the Solution Structure of Cam Complexed to DRP1P (pdb code 2k0j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Solution Structure of Cam Complexed to DRP1P, PDB code: 2k0j:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Solution Structure of Cam Complexed to DRP1P


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of Cam Complexed to DRP1P within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:0.0 occ:1.00 OE2 A:GLU31 2.3 36.9 1.0 OD1 A:ASP24 2.3 40.2 1.0 OD1 A:ASP22 2.4 43.9 1.0 O A:THR26 2.6 37.2 1.0 OE1 A:GLU31 2.8 37.5 1.0 CD A:GLU31 2.8 36.9 1.0 OD2 A:ASP22 3.0 43.2 1.0 OD1 A:ASP20 3.0 38.1 1.0 CG A:ASP22 3.0 41.9 1.0 HG1 A:THR26 3.2 0.0 1.0 CG A:ASP24 3.4 41.1 1.0 HG21 A:THR28 3.7 0.0 1.0 H A:ASP24 3.8 0.0 1.0 C A:THR26 3.8 37.7 1.0 H A:THR26 3.9 0.0 1.0 HB3 A:ASP24 3.9 0.0 1.0 OG1 A:THR26 4.0 40.3 1.0 HA A:ILE27 4.0 0.0 1.0 CG A:ASP20 4.1 38.0 1.0 H A:THR28 4.1 0.0 1.0 H A:ASP22 4.2 0.0 1.0 OD2 A:ASP24 4.2 40.9 1.0 CB A:ASP24 4.2 40.2 1.0 CG A:GLU31 4.3 37.3 1.0 HA A:ASP20 4.4 0.0 1.0 HG3 A:GLU31 4.4 0.0 1.0 CB A:ASP22 4.5 41.8 1.0 N A:THR26 4.6 39.1 1.0 OD2 A:ASP20 4.6 37.8 1.0 N A:ASP24 4.7 40.4 1.0 CA A:THR26 4.7 38.3 1.0 HG2 A:GLU31 4.7 0.0 1.0 CG2 A:THR28 4.7 36.0 1.0 N A:ILE27 4.8 36.9 1.0 H A:GLY25 4.8 0.0 1.0 CA A:ILE27 4.8 36.9 1.0 HB2 A:ASP22 4.8 0.0 1.0 HG23 A:THR28 4.9 0.0 1.0 H A:GLY23 4.9 0.0 1.0 N A:THR28 4.9 36.6 1.0 CB A:THR26 4.9 38.9 1.0 CA A:ASP24 5.0 40.5 1.0

Calcium binding site 2 out of 3 in the Solution Structure of Cam Complexed to DRP1P


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of Cam Complexed to DRP1P within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:0.0 occ:1.00 OE1 A:GLU104 2.4 35.3 1.0 OD1 A:ASP95 2.5 37.5 1.0 OD1 A:ASN97 2.6 32.8 1.0 OD1 A:ASP93 2.8 39.6 1.0 CD A:GLU104 2.9 34.0 1.0 OD2 A:ASP95 3.0 36.7 1.0 O A:TYR99 3.0 35.0 1.0 OE2 A:GLU104 3.0 36.1 1.0 CG A:ASP95 3.1 37.5 1.0 CG A:ASN97 3.1 34.7 1.0 HD22 A:ASN97 3.2 0.0 1.0 ND2 A:ASN97 3.5 33.7 1.0 CG A:ASP93 3.8 38.7 1.0 H A:ASN97 3.9 0.0 1.0 H A:SER101 4.0 0.0 1.0 HB3 A:ASN97 4.1 0.0 1.0 HE22 A:GLN135 4.2 0.0 1.0 HA A:ILE100 4.2 0.0 1.0 CG A:GLU104 4.2 34.2 1.0 C A:TYR99 4.2 34.3 1.0 CB A:ASN97 4.3 34.8 1.0 HG3 A:GLU104 4.3 0.0 1.0 HA A:ASP93 4.3 0.0 1.0 HD21 A:ASN97 4.3 0.0 1.0 H A:TYR99 4.3 0.0 1.0 OD2 A:ASP93 4.4 38.3 1.0 H A:ASP95 4.4 0.0 1.0 CB A:ASP95 4.6 37.3 1.0 HG2 A:GLU104 4.7 0.0 1.0 HE21 A:GLN135 4.7 0.0 1.0 N A:ASN97 4.7 35.3 1.0 HB2 A:TYR99 4.8 0.0 1.0 NE2 A:GLN135 4.8 42.1 1.0 HB3 A:SER101 4.8 0.0 1.0 OG A:SER101 4.9 34.3 1.0 N A:SER101 4.9 34.0 1.0 CB A:ASP93 4.9 38.2 1.0 H A:GLY96 4.9 0.0 1.0 HB2 A:ASP95 4.9 0.0 1.0 HG A:SER101 5.0 0.0 1.0

Calcium binding site 3 out of 3 in the Solution Structure of Cam Complexed to DRP1P


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution Structure of Cam Complexed to DRP1P within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:0.0 occ:1.00 O A:GLN135 2.4 39.0 1.0 OD1 A:ASP131 2.5 40.6 1.0 OD1 A:ASP133 2.5 39.6 1.0 OE1 A:GLU140 2.6 39.7 1.0 HD21 A:ASN137 2.6 0.0 1.0 OE2 A:GLU140 2.7 38.6 1.0 HE1 A:TYR99 2.8 0.0 1.0 HD22 A:ASN137 2.8 0.0 1.0 CD A:GLU140 2.9 39.9 1.0 OD2 A:ASP131 2.9 36.9 1.0 ND2 A:ASN137 3.0 39.4 1.0 OD1 A:ASP129 3.0 36.7 1.0 CG A:ASP131 3.0 37.3 1.0 H A:ASN137 3.2 0.0 1.0 HA A:VAL136 3.2 0.0 1.0 C A:GLN135 3.4 38.8 1.0 H A:ASP131 3.6 0.0 1.0 H A:GLN135 3.6 0.0 1.0 HA A:ASP129 3.6 0.0 1.0 CG A:ASP133 3.7 36.7 1.0 HD1 A:TYR99 3.7 0.0 1.0 CE1 A:TYR99 3.7 31.8 1.0 H A:ILE130 3.8 0.0 1.0 H A:ASP133 4.0 0.0 1.0 CA A:VAL136 4.0 38.8 1.0 N A:ASN137 4.1 39.5 1.0 N A:VAL136 4.1 38.7 1.0 CG A:ASN137 4.2 39.9 1.0 HB2 A:GLN135 4.2 0.0 1.0 CD1 A:TYR99 4.2 32.9 1.0 CG A:ASP129 4.2 38.0 1.0 CG A:GLU140 4.3 39.9 1.0 N A:GLN135 4.3 38.6 1.0 CA A:GLN135 4.3 39.1 1.0 HB3 A:ASP133 4.4 0.0 1.0 HG3 A:GLU140 4.4 0.0 1.0 N A:ASP131 4.5 37.8 1.0 H A:GLY132 4.5 0.0 1.0 CB A:ASP131 4.5 37.7 1.0 OD2 A:ASP133 4.5 38.9 1.0 C A:VAL136 4.6 38.9 1.0 CA A:ASP129 4.6 38.0 1.0 N A:ILE130 4.6 37.8 1.0 CB A:ASP133 4.6 37.0 1.0 HH A:TYR99 4.7 0.0 1.0 HB3 A:ASN137 4.7 0.0 1.0 HB2 A:GLU140 4.7 0.0 1.0 CB A:GLN135 4.7 38.9 1.0 N A:ASP133 4.8 36.6 1.0 H A:GLY134 4.9 0.0 1.0 CB A:ASP129 4.9 38.0 1.0 CZ A:TYR99 4.9 32.0 1.0 CB A:ASN137 4.9 39.9 1.0 H A:VAL136 4.9 0.0 1.0 OD1 A:ASN137 5.0 40.1 1.0 HG2 A:GLU140 5.0 0.0 1.0

I.Bertini, P.Kursula, C.Luchinat, G.Parigi, J.Vahokoski, M.Wilmanns, J.Yuan. Accurate Solution Structures of Proteins From X-Ray Data and A Minimal Set of uc(Nmr) Data: Calmodulin-Peptide Complexes As Examples. J.Am.Chem.Soc. V. 131 5134 2009.
ISSN: ISSN 0002-7863
PubMed: 19317469
DOI: 10.1021/JA8080764