Calcium in PDB 2k7d: uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain
Calcium Binding Sites:
The binding sites of Calcium atom in the uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain
(pdb code 2k7d). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain, PDB code: 2k7d:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 2k7d
Go back to
Calcium Binding Sites List in 2k7d
Calcium binding site 1 out
of 2 in the uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:0.0
occ:1.00
|
OD1
|
A:ASP112
|
1.7
|
0.0
|
1.0
|
OD2
|
A:ASP116
|
1.8
|
0.0
|
1.0
|
OE1
|
A:GLU123
|
1.9
|
0.0
|
1.0
|
OE2
|
A:GLU123
|
2.1
|
0.0
|
1.0
|
CD
|
A:GLU123
|
2.1
|
0.0
|
1.0
|
OD1
|
A:ASP116
|
2.3
|
0.0
|
1.0
|
CG
|
A:ASP116
|
2.3
|
0.0
|
1.0
|
CG
|
A:ASP112
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASN114
|
2.8
|
0.0
|
1.0
|
O
|
A:GLU118
|
2.8
|
0.0
|
1.0
|
HD22
|
A:ASN114
|
3.2
|
0.0
|
1.0
|
HA
|
A:ASP112
|
3.3
|
0.0
|
1.0
|
H
|
A:GLU118
|
3.4
|
0.0
|
1.0
|
OD2
|
A:ASP112
|
3.5
|
0.0
|
1.0
|
CG
|
A:GLU123
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASN114
|
3.6
|
0.0
|
1.0
|
ND2
|
A:ASN114
|
3.7
|
0.0
|
1.0
|
HG2
|
A:GLU123
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP116
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP116
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP112
|
3.8
|
0.0
|
1.0
|
C
|
A:GLU118
|
3.8
|
0.0
|
1.0
|
HA
|
A:ILE119
|
4.0
|
0.0
|
1.0
|
HB2
|
A:ASP112
|
4.0
|
0.0
|
1.0
|
CA
|
A:ASP112
|
4.1
|
0.0
|
1.0
|
HG3
|
A:GLU123
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ASP116
|
4.2
|
0.0
|
1.0
|
H
|
A:GLY115
|
4.2
|
0.0
|
1.0
|
N
|
A:GLU118
|
4.2
|
0.0
|
1.0
|
H
|
A:ASN114
|
4.3
|
0.0
|
1.0
|
N
|
A:ASP116
|
4.3
|
0.0
|
1.0
|
HB2
|
A:ASP116
|
4.3
|
0.0
|
1.0
|
H
|
A:SER120
|
4.4
|
0.0
|
1.0
|
HB3
|
A:GLU118
|
4.4
|
0.0
|
1.0
|
HB3
|
A:GLU123
|
4.5
|
0.0
|
1.0
|
CB
|
A:GLU123
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY117
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP116
|
4.6
|
0.0
|
1.0
|
CA
|
A:GLU118
|
4.6
|
0.0
|
1.0
|
HB2
|
A:GLU123
|
4.6
|
0.0
|
1.0
|
HG2
|
A:GLU118
|
4.7
|
0.0
|
1.0
|
HD21
|
A:ASN114
|
4.7
|
0.0
|
1.0
|
HB3
|
A:ASP112
|
4.8
|
0.0
|
1.0
|
N
|
A:ILE119
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY117
|
4.8
|
0.0
|
1.0
|
H
|
A:THR113
|
4.8
|
0.0
|
1.0
|
C
|
A:ASP116
|
4.8
|
0.0
|
1.0
|
CA
|
A:ILE119
|
4.9
|
0.0
|
1.0
|
C
|
A:ASP112
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY115
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU118
|
5.0
|
0.0
|
1.0
|
CB
|
A:ASN114
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 2k7d
Go back to
Calcium Binding Sites List in 2k7d
Calcium binding site 2 out
of 2 in the uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of uc(Nmr) Structure of CA2+-Bound CABP1 C-Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca502
b:0.0
occ:1.00
|
HA
|
A:LEU150
|
1.6
|
0.0
|
1.0
|
OE1
|
A:GLU160
|
1.7
|
0.0
|
1.0
|
CD
|
A:GLU160
|
2.0
|
0.0
|
1.0
|
HG2
|
A:GLU160
|
2.2
|
0.0
|
1.0
|
H
|
A:ASN151
|
2.5
|
0.0
|
1.0
|
CG
|
A:GLU160
|
2.6
|
0.0
|
1.0
|
CA
|
A:LEU150
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASN151
|
2.8
|
0.0
|
1.0
|
OD2
|
A:ASP153
|
2.8
|
0.0
|
1.0
|
OE2
|
A:GLU160
|
2.9
|
0.0
|
1.0
|
O
|
A:ARG155
|
2.9
|
0.0
|
1.0
|
OD1
|
A:ASP149
|
2.9
|
0.0
|
1.0
|
H
|
A:LEU150
|
2.9
|
0.0
|
1.0
|
N
|
A:LEU150
|
3.0
|
0.0
|
1.0
|
N
|
A:ASN151
|
3.2
|
0.0
|
1.0
|
HG3
|
A:GLU160
|
3.4
|
0.0
|
1.0
|
C
|
A:LEU150
|
3.4
|
0.0
|
1.0
|
HB2
|
A:GLU160
|
3.5
|
0.0
|
1.0
|
CB
|
A:GLU160
|
3.6
|
0.0
|
1.0
|
HB3
|
A:LEU150
|
3.7
|
0.0
|
1.0
|
OD2
|
A:ASP157
|
3.7
|
0.0
|
1.0
|
HA
|
A:VAL156
|
3.7
|
0.0
|
1.0
|
CB
|
A:LEU150
|
3.7
|
0.0
|
1.0
|
CG
|
A:ASN151
|
3.9
|
0.0
|
1.0
|
CG
|
A:ASP153
|
3.9
|
0.0
|
1.0
|
H
|
A:ARG155
|
4.0
|
0.0
|
1.0
|
C
|
A:ARG155
|
4.1
|
0.0
|
1.0
|
HB3
|
A:GLU160
|
4.1
|
0.0
|
1.0
|
OD1
|
A:ASP157
|
4.1
|
0.0
|
1.0
|
CG
|
A:ASP157
|
4.1
|
0.0
|
1.0
|
CG
|
A:ASP149
|
4.1
|
0.0
|
1.0
|
H
|
A:ASP157
|
4.1
|
0.0
|
1.0
|
C
|
A:ASP149
|
4.1
|
0.0
|
1.0
|
HG11
|
A:VAL148
|
4.2
|
0.0
|
1.0
|
HB2
|
A:LEU150
|
4.2
|
0.0
|
1.0
|
H
|
A:GLY152
|
4.3
|
0.0
|
1.0
|
H
|
A:ASP153
|
4.3
|
0.0
|
1.0
|
OD1
|
A:ASP153
|
4.4
|
0.0
|
1.0
|
HD22
|
A:ASN151
|
4.5
|
0.0
|
1.0
|
HD23
|
A:LEU150
|
4.5
|
0.0
|
1.0
|
HG21
|
A:VAL148
|
4.6
|
0.0
|
1.0
|
CA
|
A:ASN151
|
4.6
|
0.0
|
1.0
|
ND2
|
A:ASN151
|
4.6
|
0.0
|
1.0
|
O
|
A:LEU150
|
4.6
|
0.0
|
1.0
|
H
|
A:GLU160
|
4.6
|
0.0
|
1.0
|
CA
|
A:VAL156
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP157
|
4.8
|
0.0
|
1.0
|
N
|
A:ARG155
|
4.8
|
0.0
|
1.0
|
O
|
A:ASP149
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASN151
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASP149
|
4.8
|
0.0
|
1.0
|
N
|
A:VAL156
|
4.9
|
0.0
|
1.0
|
CA
|
A:GLU160
|
4.9
|
0.0
|
1.0
|
H
|
A:ASP149
|
4.9
|
0.0
|
1.0
|
CB
|
A:ASP149
|
4.9
|
0.0
|
1.0
|
CG
|
A:LEU150
|
5.0
|
0.0
|
1.0
|
OD2
|
A:ASP149
|
5.0
|
0.0
|
1.0
|
|
Reference:
J.Ames,
J.Ames.
N/A N/A.
Page generated: Fri Jul 12 13:55:23 2024
|