Calcium in PDB 2kne: Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif
Calcium Binding Sites:
The binding sites of Calcium atom in the Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif
(pdb code 2kne). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif, PDB code: 2kne:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 2kne
Go back to
Calcium Binding Sites List in 2kne
Calcium binding site 1 out
of 4 in the Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca151
b:0.0
occ:1.00
|
HA
|
A:ASP20
|
2.6
|
0.0
|
1.0
|
OE1
|
A:GLU31
|
2.6
|
0.0
|
1.0
|
O
|
A:THR26
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP24
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASP20
|
2.8
|
0.0
|
1.0
|
OE2
|
A:GLU31
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASP22
|
2.9
|
0.0
|
1.0
|
H
|
A:ASP24
|
3.1
|
0.0
|
1.0
|
CD
|
A:GLU31
|
3.1
|
0.0
|
1.0
|
HB3
|
A:ASP20
|
3.1
|
0.0
|
1.0
|
CG
|
A:ASP20
|
3.3
|
0.0
|
1.0
|
CA
|
A:ASP20
|
3.4
|
0.0
|
1.0
|
CB
|
A:ASP20
|
3.4
|
0.0
|
1.0
|
HA
|
A:ILE27
|
3.5
|
0.0
|
1.0
|
H
|
A:ASP22
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASP24
|
3.5
|
0.0
|
1.0
|
H
|
A:LYS21
|
3.6
|
0.0
|
1.0
|
C
|
A:THR26
|
3.7
|
0.0
|
1.0
|
H
|
A:THR26
|
3.7
|
0.0
|
1.0
|
H
|
A:GLY23
|
3.8
|
0.0
|
1.0
|
OD2
|
A:ASP24
|
3.8
|
0.0
|
1.0
|
C
|
A:ASP20
|
3.9
|
0.0
|
1.0
|
N
|
A:ASP24
|
4.0
|
0.0
|
1.0
|
H
|
A:GLY25
|
4.0
|
0.0
|
1.0
|
N
|
A:LYS21
|
4.0
|
0.0
|
1.0
|
HA2
|
A:GLY23
|
4.0
|
0.0
|
1.0
|
CG
|
A:ASP22
|
4.1
|
0.0
|
1.0
|
N
|
A:GLY23
|
4.1
|
0.0
|
1.0
|
H
|
A:THR28
|
4.2
|
0.0
|
1.0
|
N
|
A:ASP22
|
4.3
|
0.0
|
1.0
|
HG13
|
A:ILE27
|
4.3
|
0.0
|
1.0
|
OD2
|
A:ASP20
|
4.3
|
0.0
|
1.0
|
N
|
A:THR26
|
4.3
|
0.0
|
1.0
|
CA
|
A:ILE27
|
4.4
|
0.0
|
1.0
|
HG1
|
A:THR28
|
4.4
|
0.0
|
1.0
|
N
|
A:ILE27
|
4.5
|
0.0
|
1.0
|
CA
|
A:GLY23
|
4.5
|
0.0
|
1.0
|
HB2
|
A:ASP20
|
4.5
|
0.0
|
1.0
|
HD1
|
A:PHE19
|
4.6
|
0.0
|
1.0
|
CG
|
A:GLU31
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP20
|
4.6
|
0.0
|
1.0
|
N
|
A:GLY25
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP22
|
4.7
|
0.0
|
1.0
|
OD2
|
A:ASP22
|
4.7
|
0.0
|
1.0
|
CA
|
A:THR26
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP24
|
4.7
|
0.0
|
1.0
|
C
|
A:GLY23
|
4.7
|
0.0
|
1.0
|
O
|
A:PHE19
|
4.8
|
0.0
|
1.0
|
CA
|
A:ASP24
|
4.8
|
0.0
|
1.0
|
O
|
A:ASP20
|
4.8
|
0.0
|
1.0
|
HB3
|
A:GLU31
|
4.9
|
0.0
|
1.0
|
CA
|
A:ASP22
|
4.9
|
0.0
|
1.0
|
N
|
A:THR28
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 4 in 2kne
Go back to
Calcium Binding Sites List in 2kne
Calcium binding site 2 out
of 4 in the Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca152
b:0.0
occ:1.00
|
HD22
|
A:ASN60
|
2.2
|
0.0
|
1.0
|
O
|
A:THR62
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP58
|
2.7
|
0.0
|
1.0
|
OE2
|
A:GLU67
|
2.7
|
0.0
|
1.0
|
OE1
|
A:GLU67
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP58
|
2.7
|
0.0
|
1.0
|
ND2
|
A:ASN60
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASN60
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASP58
|
2.9
|
0.0
|
1.0
|
CD
|
A:GLU67
|
2.9
|
0.0
|
1.0
|
OD1
|
A:ASP56
|
3.0
|
0.0
|
1.0
|
H
|
A:ASP64
|
3.0
|
0.0
|
1.0
|
CG
|
A:ASN60
|
3.1
|
0.0
|
1.0
|
HA
|
A:ILE63
|
3.1
|
0.0
|
1.0
|
HD21
|
A:ASN60
|
3.5
|
0.0
|
1.0
|
OD1
|
A:ASP64
|
3.6
|
0.0
|
1.0
|
C
|
A:THR62
|
3.7
|
0.0
|
1.0
|
H
|
A:ASP58
|
3.7
|
0.0
|
1.0
|
CG
|
A:ASP64
|
3.7
|
0.0
|
1.0
|
N
|
A:ASP64
|
3.7
|
0.0
|
1.0
|
HB3
|
A:ASP64
|
3.9
|
0.0
|
1.0
|
CA
|
A:ILE63
|
4.0
|
0.0
|
1.0
|
OD2
|
A:ASP64
|
4.0
|
0.0
|
1.0
|
HB3
|
A:ASP58
|
4.1
|
0.0
|
1.0
|
CG
|
A:ASP56
|
4.1
|
0.0
|
1.0
|
CB
|
A:ASP58
|
4.1
|
0.0
|
1.0
|
H
|
A:ASN60
|
4.1
|
0.0
|
1.0
|
HG1
|
A:THR62
|
4.1
|
0.0
|
1.0
|
H
|
A:THR62
|
4.1
|
0.0
|
1.0
|
CG
|
A:GLU67
|
4.2
|
0.0
|
1.0
|
C
|
A:ILE63
|
4.3
|
0.0
|
1.0
|
N
|
A:ILE63
|
4.3
|
0.0
|
1.0
|
HA
|
A:ASP56
|
4.3
|
0.0
|
1.0
|
CB
|
A:ASP64
|
4.3
|
0.0
|
1.0
|
HG3
|
A:GLU67
|
4.3
|
0.0
|
1.0
|
HD11
|
A:ILE63
|
4.3
|
0.0
|
1.0
|
CB
|
A:ASN60
|
4.4
|
0.0
|
1.0
|
HB3
|
A:ASN60
|
4.5
|
0.0
|
1.0
|
OG1
|
A:THR62
|
4.5
|
0.0
|
1.0
|
HB2
|
A:GLU67
|
4.5
|
0.0
|
1.0
|
HD12
|
A:ILE63
|
4.5
|
0.0
|
1.0
|
N
|
A:ASP58
|
4.5
|
0.0
|
1.0
|
OD2
|
A:ASP56
|
4.6
|
0.0
|
1.0
|
CA
|
A:ASP64
|
4.7
|
0.0
|
1.0
|
CA
|
A:THR62
|
4.8
|
0.0
|
1.0
|
N
|
A:THR62
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ASP58
|
4.8
|
0.0
|
1.0
|
CA
|
A:ASP58
|
4.9
|
0.0
|
1.0
|
H
|
A:ALA57
|
4.9
|
0.0
|
1.0
|
HG21
|
A:ILE63
|
4.9
|
0.0
|
1.0
|
CB
|
A:GLU67
|
4.9
|
0.0
|
1.0
|
CD1
|
A:ILE63
|
4.9
|
0.0
|
1.0
|
N
|
A:ASN60
|
4.9
|
0.0
|
1.0
|
HG2
|
A:GLU67
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 3 out
of 4 in 2kne
Go back to
Calcium Binding Sites List in 2kne
Calcium binding site 3 out
of 4 in the Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca153
b:0.0
occ:1.00
|
HD22
|
A:ASN97
|
2.4
|
0.0
|
1.0
|
O
|
A:TYR99
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU104
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP95
|
2.6
|
0.0
|
1.0
|
ND2
|
A:ASN97
|
2.7
|
0.0
|
1.0
|
OD1
|
A:ASN97
|
2.7
|
0.0
|
1.0
|
OD1
|
A:ASP93
|
2.8
|
0.0
|
1.0
|
OE1
|
A:GLU104
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASN97
|
2.9
|
0.0
|
1.0
|
CD
|
A:GLU104
|
3.0
|
0.0
|
1.0
|
HB2
|
A:SER101
|
3.1
|
0.0
|
1.0
|
H
|
A:SER101
|
3.2
|
0.0
|
1.0
|
CG
|
A:ASP95
|
3.4
|
0.0
|
1.0
|
HD21
|
A:ASN97
|
3.4
|
0.0
|
1.0
|
HA
|
A:ASP93
|
3.4
|
0.0
|
1.0
|
H
|
A:ASN97
|
3.4
|
0.0
|
1.0
|
H
|
A:ASP95
|
3.5
|
0.0
|
1.0
|
OD2
|
A:ASP95
|
3.6
|
0.0
|
1.0
|
C
|
A:TYR99
|
3.8
|
0.0
|
1.0
|
HA
|
A:ILE100
|
3.8
|
0.0
|
1.0
|
CG
|
A:ASP93
|
3.9
|
0.0
|
1.0
|
N
|
A:SER101
|
3.9
|
0.0
|
1.0
|
H
|
A:TYR99
|
4.0
|
0.0
|
1.0
|
CB
|
A:SER101
|
4.0
|
0.0
|
1.0
|
H
|
A:LYS94
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ASN97
|
4.1
|
0.0
|
1.0
|
HB3
|
A:SER101
|
4.1
|
0.0
|
1.0
|
CB
|
A:ASN97
|
4.1
|
0.0
|
1.0
|
CA
|
A:ASP93
|
4.3
|
0.0
|
1.0
|
N
|
A:ASN97
|
4.3
|
0.0
|
1.0
|
CG
|
A:GLU104
|
4.4
|
0.0
|
1.0
|
N
|
A:ASP95
|
4.4
|
0.0
|
1.0
|
N
|
A:LYS94
|
4.4
|
0.0
|
1.0
|
H
|
A:GLY96
|
4.4
|
0.0
|
1.0
|
HB2
|
A:TYR99
|
4.4
|
0.0
|
1.0
|
HG3
|
A:GLU104
|
4.5
|
0.0
|
1.0
|
CA
|
A:ILE100
|
4.5
|
0.0
|
1.0
|
CA
|
A:SER101
|
4.6
|
0.0
|
1.0
|
C
|
A:ILE100
|
4.6
|
0.0
|
1.0
|
N
|
A:ILE100
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP93
|
4.6
|
0.0
|
1.0
|
OD2
|
A:ASP93
|
4.6
|
0.0
|
1.0
|
N
|
A:TYR99
|
4.7
|
0.0
|
1.0
|
CA
|
A:TYR99
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP93
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP95
|
4.7
|
0.0
|
1.0
|
CA
|
A:ASN97
|
4.8
|
0.0
|
1.0
|
HB3
|
A:LYS94
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY96
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ASN97
|
4.9
|
0.0
|
1.0
|
HG2
|
A:GLU104
|
4.9
|
0.0
|
1.0
|
O
|
A:PHE92
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 4 out
of 4 in 2kne
Go back to
Calcium Binding Sites List in 2kne
Calcium binding site 4 out
of 4 in the Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca154
b:0.0
occ:1.00
|
O
|
A:GLN135
|
2.5
|
0.0
|
1.0
|
OD1
|
A:ASP131
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU140
|
2.6
|
0.0
|
1.0
|
OD2
|
A:ASP133
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP133
|
2.7
|
0.0
|
1.0
|
OD1
|
A:ASP129
|
2.7
|
0.0
|
1.0
|
OE1
|
A:GLU140
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASP133
|
2.9
|
0.0
|
1.0
|
CD
|
A:GLU140
|
2.9
|
0.0
|
1.0
|
HA
|
A:ASP129
|
3.3
|
0.0
|
1.0
|
HA
|
A:VAL136
|
3.5
|
0.0
|
1.0
|
H
|
A:ASN137
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP131
|
3.6
|
0.0
|
1.0
|
H
|
A:ASP131
|
3.7
|
0.0
|
1.0
|
O
|
A:ASP131
|
3.8
|
0.0
|
1.0
|
C
|
A:GLN135
|
3.8
|
0.0
|
1.0
|
CG
|
A:ASP129
|
3.9
|
0.0
|
1.0
|
H
|
A:GLN135
|
3.9
|
0.0
|
1.0
|
H
|
A:ILE130
|
3.9
|
0.0
|
1.0
|
OD2
|
A:ASP131
|
4.0
|
0.0
|
1.0
|
HG23
|
A:ILE130
|
4.0
|
0.0
|
1.0
|
H
|
A:ASP133
|
4.0
|
0.0
|
1.0
|
CB
|
A:ASP133
|
4.2
|
0.0
|
1.0
|
CA
|
A:ASP129
|
4.3
|
0.0
|
1.0
|
CG
|
A:GLU140
|
4.3
|
0.0
|
1.0
|
HB3
|
A:ASP133
|
4.3
|
0.0
|
1.0
|
CA
|
A:VAL136
|
4.4
|
0.0
|
1.0
|
N
|
A:ASN137
|
4.4
|
0.0
|
1.0
|
HB2
|
A:ASN137
|
4.4
|
0.0
|
1.0
|
HG3
|
A:GLU140
|
4.4
|
0.0
|
1.0
|
N
|
A:ILE130
|
4.5
|
0.0
|
1.0
|
N
|
A:ASP131
|
4.5
|
0.0
|
1.0
|
N
|
A:VAL136
|
4.6
|
0.0
|
1.0
|
N
|
A:GLN135
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASP129
|
4.7
|
0.0
|
1.0
|
C
|
A:ASP131
|
4.7
|
0.0
|
1.0
|
C
|
A:ASP129
|
4.7
|
0.0
|
1.0
|
CA
|
A:GLN135
|
4.8
|
0.0
|
1.0
|
OD2
|
A:ASP129
|
4.8
|
0.0
|
1.0
|
H
|
A:GLY134
|
4.8
|
0.0
|
1.0
|
N
|
A:ASP133
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASN137
|
4.9
|
0.0
|
1.0
|
C
|
A:VAL136
|
4.9
|
0.0
|
1.0
|
HB2
|
A:GLU140
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASP133
|
4.9
|
0.0
|
1.0
|
CB
|
A:ASP131
|
4.9
|
0.0
|
1.0
|
O
|
A:ALA128
|
4.9
|
0.0
|
1.0
|
HG2
|
A:GLU140
|
5.0
|
0.0
|
1.0
|
HB2
|
A:GLN135
|
5.0
|
0.0
|
1.0
|
HB2
|
A:ASP129
|
5.0
|
0.0
|
1.0
|
CA
|
A:ASP131
|
5.0
|
0.0
|
1.0
|
|
Reference:
N.Juranic,
E.Atanasova,
A.G.Filoteo,
S.Macura,
F.G.Prendergast,
J.T.Penniston,
E.E.Strehler.
Calmodulin Wraps Around Its Binding Domain in the Plasma Membrane CA2+ Pump Anchored By A Novel 18-1 Motif. J.Biol.Chem. V. 285 4015 2010.
ISSN: ISSN 0021-9258
PubMed: 19996092
DOI: 10.1074/JBC.M109.060491
Page generated: Fri Jul 12 13:59:24 2024
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