Calcium in PDB 2kri: Structure of A Complex Between Domain V of BETA2-Glycoprotein I and the Fourth Ligand-Binding Module From Ldlr Determined with Haddock

The binding sites of Calcium atom in the Structure of A Complex Between Domain V of BETA2-Glycoprotein I and the Fourth Ligand-Binding Module From Ldlr Determined with Haddock (pdb code 2kri). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of A Complex Between Domain V of BETA2-Glycoprotein I and the Fourth Ligand-Binding Module From Ldlr Determined with Haddock, PDB code: 2kri:

Calcium binding site 1 out of 1 in the Structure of A Complex Between Domain V of BETA2-Glycoprotein I and the Fourth Ligand-Binding Module From Ldlr Determined with Haddock


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Complex Between Domain V of BETA2-Glycoprotein I and the Fourth Ligand-Binding Module From Ldlr Determined with Haddock within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca166 b:10.0 occ:1.00 OD2 B:ASP151 1.8 10.0 1.0 OD2 B:ASP157 1.8 10.0 1.0 OE2 B:GLU158 1.8 10.0 1.0 OD1 B:ASP147 1.9 10.0 1.0 O B:TRP144 2.0 10.0 1.0 O B:ASP149 2.4 10.0 1.0 CG B:ASP151 3.0 10.0 1.0 CD B:GLU158 3.0 10.0 1.0 H B:ASP147 3.1 10.0 1.0 CG B:ASP157 3.1 10.0 1.0 CG B:ASP147 3.2 10.0 1.0 C B:TRP144 3.2 10.0 1.0 H B:ASP149 3.5 10.0 1.0 H B:ASP151 3.6 10.0 1.0 C B:ASP149 3.6 10.0 1.0 H B:CYS146 3.7 10.0 1.0 CG B:GLU158 3.7 10.0 1.0 CB B:ASP151 3.8 10.0 1.0 HZ1 A:LYS308 3.8 10.0 1.0 OD1 B:ASP157 3.9 10.0 1.0 N B:ASP147 3.9 10.0 1.0 OD1 B:ASP151 3.9 10.0 1.0 CA B:TRP144 3.9 10.0 1.0 HZ2 A:LYS308 3.9 10.0 1.0 OD2 B:ASP147 4.0 10.0 1.0 OE1 B:GLU158 4.0 10.0 1.0 CB B:ASP157 4.0 10.0 1.0 N B:ASP151 4.1 10.0 1.0 CB B:ASP147 4.1 10.0 1.0 CB B:ASP149 4.1 10.0 1.0 N B:CYS146 4.1 10.0 1.0 CB B:TRP144 4.1 10.0 1.0 N B:ASP149 4.2 10.0 1.0 CA B:ASP149 4.2 10.0 1.0 N B:ALA145 4.2 10.0 1.0 O B:ASP157 4.3 10.0 1.0 NZ A:LYS308 4.3 10.0 1.0 CA B:ASP147 4.5 10.0 1.0 CA B:ALA145 4.5 10.0 1.0 CA B:ASP151 4.6 10.0 1.0 H B:ASN148 4.6 10.0 1.0 C B:ASP157 4.6 10.0 1.0 C B:ALA145 4.6 10.0 1.0 N B:PRO150 4.7 10.0 1.0 HZ3 A:LYS308 4.7 10.0 1.0 C B:PRO150 4.8 10.0 1.0 CA B:CYS146 4.8 10.0 1.0 CD1 B:ILE140 4.8 10.0 1.0 C B:CYS146 4.8 10.0 1.0 C B:ASP147 4.9 10.0 1.0 N B:ASN148 4.9 10.0 1.0 CA B:PRO150 4.9 10.0 1.0 H B:CYS152 5.0 10.0 1.0 CA B:ASP157 5.0 10.0 1.0

C.J.Lee, A.De Biasio, N.Beglova. Mode of Interaction Between BETA2GPI and Lipoprotein Receptors Suggests Mutually Exclusive Binding of BETA2GPI to the Receptors and Anionic Phospholipids. Structure V. 18 366 2010.
ISSN: ISSN 0969-2126
PubMed: 20223219
DOI: 10.1016/J.STR.2009.12.013