Calcium in PDB 2l4h: The Solution Structure of Calcium Bound CIB1
Calcium Binding Sites:
The binding sites of Calcium atom in the The Solution Structure of Calcium Bound CIB1
(pdb code 2l4h). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
The Solution Structure of Calcium Bound CIB1, PDB code: 2l4h:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 2l4h
Go back to
Calcium Binding Sites List in 2l4h
Calcium binding site 1 out
of 2 in the The Solution Structure of Calcium Bound CIB1
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of The Solution Structure of Calcium Bound CIB1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca500
b:0.0
occ:1.00
|
OD1
|
A:ASP116
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP118
|
2.6
|
0.0
|
1.0
|
O
|
A:THR122
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP120
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP127
|
2.8
|
0.0
|
1.0
|
HA
|
A:LEU123
|
2.9
|
0.0
|
1.0
|
HB2
|
A:ASP118
|
2.9
|
0.0
|
1.0
|
OD1
|
A:ASP120
|
3.2
|
0.0
|
1.0
|
CG
|
A:ASP118
|
3.2
|
0.0
|
1.0
|
CG
|
A:ASP120
|
3.3
|
0.0
|
1.0
|
HG
|
A:LEU123
|
3.3
|
0.0
|
1.0
|
CB
|
A:ASP118
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP127
|
3.6
|
0.0
|
1.0
|
C
|
A:THR122
|
3.8
|
0.0
|
1.0
|
CG
|
A:ASP116
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP118
|
3.8
|
0.0
|
1.0
|
HB3
|
A:ASP127
|
3.9
|
0.0
|
1.0
|
HA
|
A:ASP116
|
3.9
|
0.0
|
1.0
|
H
|
A:ASN124
|
3.9
|
0.0
|
1.0
|
HD12
|
A:LEU123
|
3.9
|
0.0
|
1.0
|
CA
|
A:LEU123
|
4.0
|
0.0
|
1.0
|
OD2
|
A:ASP118
|
4.1
|
0.0
|
1.0
|
CB
|
A:ASP127
|
4.2
|
0.0
|
1.0
|
HB3
|
A:ASP118
|
4.3
|
0.0
|
1.0
|
CG
|
A:LEU123
|
4.3
|
0.0
|
1.0
|
H
|
A:ASP120
|
4.3
|
0.0
|
1.0
|
HB2
|
A:ASP127
|
4.3
|
0.0
|
1.0
|
N
|
A:LEU123
|
4.3
|
0.0
|
1.0
|
OD1
|
A:ASP127
|
4.4
|
0.0
|
1.0
|
H
|
A:THR122
|
4.4
|
0.0
|
1.0
|
HG1
|
A:THR122
|
4.5
|
0.0
|
1.0
|
OD2
|
A:ASP116
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY121
|
4.5
|
0.0
|
1.0
|
N
|
A:ASP118
|
4.6
|
0.0
|
1.0
|
CD1
|
A:LEU123
|
4.7
|
0.0
|
1.0
|
CA
|
A:ASP118
|
4.7
|
0.0
|
1.0
|
CB
|
A:LEU123
|
4.7
|
0.0
|
1.0
|
N
|
A:ASN124
|
4.7
|
0.0
|
1.0
|
CA
|
A:ASP116
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASP120
|
4.8
|
0.0
|
1.0
|
H
|
A:ASP119
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASP116
|
4.9
|
0.0
|
1.0
|
HD21
|
A:ASN124
|
4.9
|
0.0
|
1.0
|
C
|
A:LEU123
|
4.9
|
0.0
|
1.0
|
N
|
A:THR122
|
5.0
|
0.0
|
1.0
|
HB3
|
A:LEU123
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 2l4h
Go back to
Calcium Binding Sites List in 2l4h
Calcium binding site 2 out
of 2 in the The Solution Structure of Calcium Bound CIB1
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of The Solution Structure of Calcium Bound CIB1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca501
b:0.0
occ:1.00
|
OD2
|
A:ASP161
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP165
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP163
|
2.8
|
0.0
|
1.0
|
OE1
|
A:GLU172
|
2.9
|
0.0
|
1.0
|
CD
|
A:GLU172
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP165
|
3.0
|
0.0
|
1.0
|
O
|
A:THR167
|
3.0
|
0.0
|
1.0
|
OE2
|
A:GLU172
|
3.1
|
0.0
|
1.0
|
CG
|
A:ASP165
|
3.2
|
0.0
|
1.0
|
HD22
|
A:LEU157
|
3.3
|
0.0
|
1.0
|
HD22
|
A:ASN169
|
3.4
|
0.0
|
1.0
|
CG
|
A:ASP161
|
3.4
|
0.0
|
1.0
|
HG2
|
A:GLU172
|
3.5
|
0.0
|
1.0
|
ND2
|
A:ASN169
|
3.5
|
0.0
|
1.0
|
OD1
|
A:ASP161
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP163
|
3.7
|
0.0
|
1.0
|
CG
|
A:GLU172
|
3.8
|
0.0
|
1.0
|
HA
|
A:ILE168
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP165
|
3.8
|
0.0
|
1.0
|
CG
|
A:ASN169
|
3.8
|
0.0
|
1.0
|
HD23
|
A:LEU157
|
3.9
|
0.0
|
1.0
|
OD1
|
A:ASP163
|
3.9
|
0.0
|
1.0
|
HD21
|
A:ASN169
|
3.9
|
0.0
|
1.0
|
HB2
|
A:GLU172
|
3.9
|
0.0
|
1.0
|
OD1
|
A:ASN169
|
4.0
|
0.0
|
1.0
|
CD2
|
A:LEU157
|
4.0
|
0.0
|
1.0
|
H
|
A:THR167
|
4.0
|
0.0
|
1.0
|
C
|
A:THR167
|
4.1
|
0.0
|
1.0
|
H
|
A:ASN169
|
4.1
|
0.0
|
1.0
|
HD21
|
A:LEU157
|
4.1
|
0.0
|
1.0
|
HG22
|
A:THR167
|
4.3
|
0.0
|
1.0
|
CB
|
A:GLU172
|
4.5
|
0.0
|
1.0
|
HB3
|
A:ASN169
|
4.5
|
0.0
|
1.0
|
H
|
A:GLU172
|
4.5
|
0.0
|
1.0
|
N
|
A:ASN169
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY166
|
4.5
|
0.0
|
1.0
|
CA
|
A:ILE168
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASP165
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP165
|
4.7
|
0.0
|
1.0
|
HG3
|
A:GLU172
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP161
|
4.7
|
0.0
|
1.0
|
HB2
|
A:ASP161
|
4.7
|
0.0
|
1.0
|
H
|
A:ARG164
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASN169
|
4.7
|
0.0
|
1.0
|
N
|
A:ILE168
|
4.8
|
0.0
|
1.0
|
C
|
A:ILE168
|
4.8
|
0.0
|
1.0
|
N
|
A:THR167
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASP165
|
4.9
|
0.0
|
1.0
|
|
Reference:
H.Huang,
H.Ishida,
A.P.Yamniuk,
H.J.Vogel.
Solution Structures of CA2+-CIB1 and MG2+-CIB1 and Their Interactions with the Platelet Integrin {Alpha}Iib Cytoplasmic Domain. J.Biol.Chem. V. 286 17181 2011.
ISSN: ISSN 0021-9258
PubMed: 21388953
DOI: 10.1074/JBC.M110.179028
Page generated: Fri Jul 12 14:02:40 2024
|