Calcium in PDB 2lgp: Solution Structure of LA45 From Ldlr

The binding sites of Calcium atom in the Solution Structure of LA45 From Ldlr (pdb code 2lgp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of LA45 From Ldlr, PDB code: 2lgp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of LA45 From Ldlr


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of LA45 From Ldlr within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca215 b:0.3 occ:1.00 HB2 A:ASP151 2.5 0.0 1.0 HB3 A:TRP144 2.6 0.0 1.0 O A:TRP144 2.6 0.0 1.0 OD2 A:ASP147 2.7 0.0 1.0 OD2 A:ASP157 2.7 0.0 1.0 OD1 A:ASP151 2.7 0.0 1.0 O A:ASP149 2.7 0.0 1.0 OE2 A:GLU158 2.8 0.0 1.0 H A:ASP151 2.8 0.0 1.0 CG A:ASP151 3.1 0.0 1.0 CB A:ASP151 3.2 0.0 1.0 HA A:TRP144 3.2 0.0 1.0 HB2 A:ASP157 3.3 0.0 1.0 N A:ASP151 3.4 0.0 1.0 C A:TRP144 3.4 0.0 1.0 CG A:ASP157 3.4 0.0 1.0 CB A:TRP144 3.5 0.0 1.0 CA A:TRP144 3.6 0.0 1.0 H A:ASP147 3.6 0.0 1.0 H A:CYS146 3.7 0.0 1.0 CB A:ASP157 3.8 0.0 1.0 CG A:ASP147 3.8 0.0 1.0 CA A:ASP151 3.9 0.0 1.0 C A:ASP149 3.9 0.0 1.0 OD2 A:ASP151 4.0 0.0 1.0 CD A:GLU158 4.0 0.0 1.0 HA A:PRO150 4.0 0.0 1.0 HB3 A:ASP151 4.1 0.0 1.0 HB3 A:ASP157 4.1 0.0 1.0 HD11 A:ILE140 4.1 0.0 1.0 HB2 A:TRP144 4.2 0.0 1.0 HG2 A:GLU158 4.3 0.0 1.0 H A:CYS152 4.3 0.0 1.0 C A:PRO150 4.3 0.0 1.0 H A:ASN148 4.3 0.0 1.0 H A:ASP149 4.3 0.0 1.0 CG A:TRP144 4.3 0.0 1.0 HB3 A:ASP147 4.4 0.0 1.0 OD1 A:ASP157 4.4 0.0 1.0 CA A:PRO150 4.5 0.0 1.0 N A:ASP147 4.6 0.0 1.0 HD13 A:ILE140 4.6 0.0 1.0 HA A:ASP151 4.6 0.0 1.0 N A:CYS146 4.6 0.0 1.0 N A:ALA145 4.7 0.0 1.0 OD1 A:ASP147 4.7 0.0 1.0 CB A:ASP147 4.7 0.0 1.0 N A:PRO150 4.7 0.0 1.0 CG A:GLU158 4.7 0.0 1.0 CD1 A:ILE140 4.8 0.0 1.0 HE3 A:TRP144 4.8 0.0 1.0 N A:ASP149 4.9 0.0 1.0 HB2 A:ASP149 4.9 0.0 1.0 OE1 A:GLU158 4.9 0.0 1.0 HA A:ALA145 5.0 0.0 1.0 N A:CYS152 5.0 0.0 1.0 C A:ASP151 5.0 0.0 1.0 CA A:ASP149 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of LA45 From Ldlr


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of LA45 From Ldlr within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca216 b:0.3 occ:1.00 HB2 A:ASP200 2.5 0.0 1.0 H A:ASP200 2.6 0.0 1.0 O A:TRP193 2.7 0.0 1.0 OD2 A:ASP206 2.7 0.0 1.0 O A:GLY198 2.7 0.0 1.0 OD1 A:ASP200 2.7 0.0 1.0 OD2 A:ASP196 2.7 0.0 1.0 OE2 A:GLU207 2.7 0.0 1.0 CG A:ASP200 3.1 0.0 1.0 N A:ASP200 3.1 0.0 1.0 CB A:ASP200 3.1 0.0 1.0 HB3 A:TRP193 3.5 0.0 1.0 HA A:PRO199 3.6 0.0 1.0 CG A:ASP206 3.6 0.0 1.0 C A:GLY198 3.7 0.0 1.0 CA A:ASP200 3.7 0.0 1.0 HG2 A:GLU207 3.8 0.0 1.0 CG A:ASP196 3.8 0.0 1.0 C A:TRP193 3.8 0.0 1.0 CD A:GLU207 3.8 0.0 1.0 HD13 A:ILE189 3.9 0.0 1.0 C A:PRO199 3.9 0.0 1.0 OD2 A:ASP200 4.0 0.0 1.0 H A:ASP196 4.0 0.0 1.0 CA A:PRO199 4.1 0.0 1.0 HB3 A:ASP200 4.1 0.0 1.0 OD1 A:ASP206 4.1 0.0 1.0 CG A:GLU207 4.2 0.0 1.0 HG3 A:GLU207 4.2 0.0 1.0 N A:PRO199 4.3 0.0 1.0 CB A:TRP193 4.3 0.0 1.0 HA A:TRP193 4.4 0.0 1.0 OD1 A:ASP196 4.4 0.0 1.0 HA A:ARG194 4.4 0.0 1.0 CA A:TRP193 4.5 0.0 1.0 H A:CYS195 4.5 0.0 1.0 HA A:ASP200 4.5 0.0 1.0 HD12 A:ILE189 4.5 0.0 1.0 CD1 A:ILE189 4.6 0.0 1.0 HB2 A:ASP206 4.6 0.0 1.0 H A:GLY198 4.6 0.0 1.0 C A:ASP200 4.7 0.0 1.0 HD11 A:ILE189 4.7 0.0 1.0 HB2 A:TRP193 4.7 0.0 1.0 CB A:ASP206 4.7 0.0 1.0 HB3 A:ASP196 4.8 0.0 1.0 CA A:GLY198 4.8 0.0 1.0 O A:PRO199 4.8 0.0 1.0 CB A:ASP196 4.9 0.0 1.0 N A:ARG194 4.9 0.0 1.0 OE1 A:GLU207 4.9 0.0 1.0 N A:ASP196 5.0 0.0 1.0 N A:GLY198 5.0 0.0 1.0 HA3 A:GLY198 5.0 0.0 1.0

M.Guttman, E.A.Komives. The Structure, Dynamics, and Binding of the LA45 Module Pair of the Low-Density Lipoprotein Receptor Suggest An Important Role For LA4 in Ligand Release. Biochemistry V. 50 11001 2011.
ISSN: ISSN 0006-2960
PubMed: 22091758
DOI: 10.1021/BI2014486