Calcium in PDB 2lhh: Solution Structure of CA2+-Bound Ycam

The binding sites of Calcium atom in the Solution Structure of CA2+-Bound Ycam (pdb code 2lhh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Solution Structure of CA2+-Bound Ycam, PDB code: 2lhh:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Solution Structure of CA2+-Bound Ycam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of CA2+-Bound Ycam within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:4.4 occ:1.00 O A:SER26 2.8 51.1 1.0 OD1 A:ASP20 2.8 24.2 1.0 OD1 A:ASN24 2.8 33.4 1.0 OE2 A:GLU31 2.8 21.4 1.0 OE1 A:GLU31 2.8 74.2 1.0 HA A:ILE27 2.9 74.3 1.0 HA A:ASP20 2.9 61.2 1.0 H A:LYS21 3.0 2.2 1.0 CD A:GLU31 3.1 72.3 1.0 HE2 A:GLU31 3.1 13.2 1.0 OD2 A:ASP22 3.2 72.0 1.0 HG12 A:ILE27 3.2 0.5 1.0 CG A:ASP20 3.4 14.4 1.0 OD1 A:ASP22 3.6 63.5 1.0 CG A:ASP22 3.6 51.3 1.0 H A:ASP22 3.7 51.5 1.0 HG22 A:ILE27 3.7 63.5 1.0 C A:SER26 3.8 55.4 1.0 H A:ASN24 3.8 52.4 1.0 N A:LYS21 3.8 31.1 1.0 CA A:ASP20 3.8 61.5 1.0 CG A:ASN24 3.8 62.4 1.0 CA A:ILE27 3.8 74.2 1.0 HG13 A:ILE27 3.9 64.2 1.0 OD2 A:ASP20 3.9 65.3 1.0 CG1 A:ILE27 3.9 75.1 1.0 HD22 A:ASN24 4.0 63.2 1.0 H A:ASN23 4.1 62.1 1.0 CB A:ASP20 4.2 43.3 1.0 N A:ILE27 4.2 71.2 1.0 HB2 A:GLU31 4.2 2.2 1.0 H A:GLY25 4.3 64.2 1.0 HB3 A:GLU31 4.3 11.2 1.0 CB A:ILE27 4.3 32.4 1.0 ND2 A:ASN24 4.3 70.4 1.0 C A:ASP20 4.3 51.4 1.0 H A:SER28 4.4 32.0 1.0 CG A:GLU31 4.4 14.5 1.0 N A:ASP22 4.4 53.4 1.0 O A:PHE19 4.5 44.1 1.0 CG2 A:ILE27 4.5 1.1 1.0 CB A:GLU31 4.6 61.2 1.0 HB2 A:LYS21 4.6 53.2 1.0 H A:SER26 4.6 5.0 1.0 N A:ASN23 4.7 24.1 1.0 N A:ASN24 4.8 43.5 1.0 HE1 A:PHE16 4.8 35.1 1.0 N A:SER26 4.8 73.3 1.0 HD2 A:ASP20 4.8 60.2 1.0 HB2 A:ASP20 4.8 21.1 1.0 CA A:LYS21 4.9 52.5 1.0 CB A:ASP22 4.9 4.4 1.0 CA A:SER26 4.9 2.1 1.0 HB3 A:ASP20 5.0 62.2 1.0 N A:ASP20 5.0 32.1 1.0 HG2 A:GLU31 5.0 45.1 1.0 C A:ILE27 5.0 11.3 1.0

Calcium binding site 2 out of 3 in the Solution Structure of CA2+-Bound Ycam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of CA2+-Bound Ycam within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:20.4 occ:1.00 HA A:ASP56 2.7 71.1 1.0 H A:VAL57 2.7 13.2 1.0 OD1 A:ASN60 2.8 64.2 1.0 OE2 A:GLU67 2.8 14.0 1.0 OE1 A:GLU67 2.8 1.3 1.0 O A:GLN62 2.8 13.1 1.0 OD1 A:ASP56 2.8 43.5 1.0 HE2 A:GLU67 3.1 50.1 1.0 OD2 A:ASP58 3.2 32.1 1.0 CD A:GLU67 3.2 53.2 1.0 H A:ASP58 3.3 63.0 1.0 CG A:ASN60 3.4 55.5 1.0 H A:ASN60 3.4 62.2 1.0 HD22 A:ASN60 3.4 12.1 1.0 OD1 A:ASP58 3.6 5.3 1.0 CA A:ASP56 3.6 11.1 1.0 N A:VAL57 3.6 43.4 1.0 H A:GLY59 3.6 4.3 1.0 CG A:ASP58 3.6 62.1 1.0 ND2 A:ASN60 3.7 12.2 1.0 H A:GLN62 3.7 51.0 1.0 CG A:ASP56 3.8 71.3 1.0 CB A:ASP56 4.0 74.5 1.0 HB3 A:ASP56 4.0 41.1 1.0 C A:GLN62 4.1 3.3 1.0 C A:ASP56 4.1 65.2 1.0 HB A:VAL57 4.2 72.1 1.0 HA A:ILE63 4.2 24.0 1.0 N A:ASP58 4.2 11.3 1.0 HD13 A:ILE63 4.3 70.2 1.0 N A:ASN60 4.4 43.4 1.0 O A:ILE55 4.4 54.4 1.0 H A:GLU64 4.5 13.1 1.0 N A:GLY59 4.5 61.3 1.0 HD21 A:ASN60 4.5 43.0 1.0 H A:HIS61 4.5 0.3 1.0 HD12 A:ILE63 4.5 64.2 1.0 CB A:ASN60 4.6 24.5 1.0 HB3 A:ASN60 4.6 33.2 1.0 N A:GLN62 4.6 65.2 1.0 HB2 A:GLN62 4.6 25.1 1.0 CA A:VAL57 4.7 43.4 1.0 N A:ASP56 4.7 20.4 1.0 CG A:GLU67 4.7 12.3 1.0 HB2 A:GLU64 4.9 44.3 1.0 CA A:GLN62 4.9 73.3 1.0 CD1 A:ILE63 4.9 52.0 1.0 CB A:ASP58 4.9 64.5 1.0 CB A:VAL57 4.9 51.4 1.0 C A:ILE55 5.0 75.3 1.0 HG21 A:VAL57 5.0 20.0 1.0

Calcium binding site 3 out of 3 in the Solution Structure of CA2+-Bound Ycam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution Structure of CA2+-Bound Ycam within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:55.0 occ:1.00 HB2 A:ASP97 2.7 25.1 1.0 O A:LEU99 2.8 14.1 1.0 OE2 A:GLU104 2.8 40.1 1.0 OE1 A:GLU104 2.8 34.5 1.0 OD1 A:ASN95 2.8 61.4 1.0 OD1 A:ASP97 2.8 45.2 1.0 HD22 A:ASN95 3.0 35.4 1.0 CD A:GLU104 3.2 54.2 1.0 OD1 A:ASP93 3.2 72.4 1.0 CB A:ASP97 3.4 61.1 1.0 HB3 A:ASP97 3.5 71.0 1.0 CG A:ASP97 3.5 63.4 1.0 CG A:ASN95 3.6 33.4 1.0 ND2 A:ASN95 3.6 61.2 1.0 OD2 A:ASP93 3.6 51.4 1.0 HA A:ILE100 3.6 65.2 1.0 CG A:ASP93 3.6 21.1 1.0 HE2 A:GLU104 3.8 63.1 1.0 C A:LEU99 4.1 60.1 1.0 HG23 A:ILE100 4.3 45.4 1.0 H A:LEU99 4.4 55.0 1.0 HA A:ASP93 4.4 22.3 1.0 HD21 A:ASN95 4.5 12.4 1.0 H A:ASP97 4.6 63.1 1.0 H A:SER101 4.6 13.3 1.0 CA A:ILE100 4.6 42.5 1.0 HB2 A:GLU104 4.7 40.0 1.0 CG A:GLU104 4.7 13.5 1.0 OD2 A:ASP97 4.8 41.2 1.0 CA A:ASP97 4.8 74.3 1.0 HB3 A:LEU99 4.8 23.4 1.0 N A:ILE100 4.8 53.4 1.0 CB A:ASP93 4.9 73.1 1.0

K.Ogura, H.Kumeta, K.Takahasi, Y.Kobashigawa, R.Yoshida, H.Itoh, M.Yazawa, F.Inagaki. Solution Structures of Yeast Saccharomyces Cerevisiae Calmodulin in Calcium- and Target Peptide-Bound States Reveal Similarities and Differences to Vertebrate Calmodulin. Genes Cells V. 17 159 2012.
ISSN: ISSN 1356-9597
PubMed: 22280008
DOI: 10.1111/J.1365-2443.2012.01580.X