Calcium in PDB 2llo: Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide
(pdb code 2llo). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide, PDB code: 2llo:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 2llo
Go back to
Calcium Binding Sites List in 2llo
Calcium binding site 1 out
of 2 in the Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca181
b:0.5
occ:1.00
|
OE2
|
A:GLU31
|
1.7
|
0.9
|
1.0
|
OD2
|
A:ASP24
|
1.7
|
0.6
|
1.0
|
OD1
|
A:ASP20
|
1.7
|
0.6
|
1.0
|
OD2
|
A:ASP22
|
1.8
|
0.6
|
1.0
|
CG
|
A:ASP24
|
2.6
|
0.5
|
1.0
|
HB2
|
A:ASP22
|
2.8
|
0.5
|
1.0
|
CG
|
A:ASP22
|
2.8
|
0.5
|
1.0
|
OD1
|
A:ASP24
|
2.9
|
0.7
|
1.0
|
CG
|
A:ASP20
|
2.9
|
0.5
|
1.0
|
CD
|
A:GLU31
|
2.9
|
0.3
|
1.0
|
H
|
A:ASP22
|
3.4
|
0.6
|
1.0
|
CB
|
A:ASP22
|
3.4
|
0.6
|
1.0
|
OD2
|
A:ASP20
|
3.5
|
0.6
|
1.0
|
HG2
|
A:GLU31
|
3.6
|
0.5
|
1.0
|
CG
|
A:GLU31
|
3.7
|
0.4
|
1.0
|
HG3
|
A:GLU31
|
3.8
|
0.5
|
1.0
|
H
|
A:ASP24
|
3.9
|
0.6
|
1.0
|
OE1
|
A:GLU31
|
3.9
|
0.9
|
1.0
|
HB2
|
A:ASP20
|
3.9
|
0.5
|
1.0
|
OD1
|
A:ASP22
|
3.9
|
0.6
|
1.0
|
H
|
A:LYS21
|
3.9
|
0.6
|
1.0
|
CB
|
A:ASP20
|
4.0
|
0.5
|
1.0
|
HA
|
A:ASP20
|
4.0
|
0.5
|
1.0
|
CB
|
A:ASP24
|
4.0
|
0.6
|
1.0
|
O
|
A:THR26
|
4.1
|
0.6
|
1.0
|
N
|
A:ASP22
|
4.1
|
0.6
|
1.0
|
HD3
|
A:LYS30
|
4.1
|
0.5
|
1.0
|
HB3
|
A:ASP22
|
4.2
|
0.6
|
1.0
|
HG1
|
A:THR26
|
4.2
|
0.7
|
1.0
|
HB3
|
A:ASP24
|
4.2
|
0.7
|
1.0
|
H
|
A:THR26
|
4.3
|
0.8
|
1.0
|
H
|
A:GLY23
|
4.3
|
0.6
|
1.0
|
CA
|
A:ASP22
|
4.3
|
0.6
|
1.0
|
HG1
|
A:THR28
|
4.4
|
0.6
|
1.0
|
H
|
A:GLY25
|
4.5
|
0.5
|
1.0
|
CA
|
A:ASP20
|
4.5
|
0.5
|
1.0
|
N
|
A:LYS21
|
4.7
|
0.6
|
1.0
|
N
|
A:ASP24
|
4.7
|
0.6
|
1.0
|
HB2
|
A:ASP24
|
4.7
|
0.7
|
1.0
|
HB3
|
A:LYS30
|
4.8
|
0.4
|
1.0
|
HB3
|
A:ASP20
|
4.8
|
0.5
|
1.0
|
N
|
A:GLY23
|
4.9
|
0.7
|
1.0
|
CA
|
A:ASP24
|
4.9
|
0.6
|
1.0
|
OG1
|
A:THR26
|
4.9
|
0.7
|
1.0
|
HZ1
|
A:LYS30
|
4.9
|
0.7
|
1.0
|
|
Calcium binding site 2 out
of 2 in 2llo
Go back to
Calcium Binding Sites List in 2llo
Calcium binding site 2 out
of 2 in the Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution uc(Nmr)-Derived Structure of Calmodulin N-Lobe Bound with Er Alpha Peptide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca182
b:0.5
occ:1.00
|
OE1
|
A:GLU67
|
1.7
|
0.5
|
1.0
|
OD1
|
A:ASP56
|
1.7
|
0.5
|
1.0
|
OD2
|
A:ASP58
|
1.8
|
0.6
|
1.0
|
O
|
A:THR62
|
2.0
|
0.5
|
1.0
|
OD1
|
A:ASP58
|
2.2
|
0.6
|
1.0
|
CG
|
A:ASP58
|
2.3
|
0.6
|
1.0
|
CD
|
A:GLU67
|
2.8
|
0.5
|
1.0
|
CG
|
A:ASP56
|
2.9
|
0.5
|
1.0
|
HG12
|
A:ILE63
|
3.0
|
0.5
|
1.0
|
HA
|
A:ILE63
|
3.1
|
0.5
|
1.0
|
C
|
A:THR62
|
3.1
|
0.5
|
1.0
|
OD1
|
A:ASN60
|
3.3
|
1.2
|
1.0
|
OE2
|
A:GLU67
|
3.3
|
0.6
|
1.0
|
HD22
|
A:ASN60
|
3.4
|
2.2
|
1.0
|
H
|
A:THR62
|
3.4
|
0.6
|
1.0
|
OD2
|
A:ASP56
|
3.5
|
0.6
|
1.0
|
H
|
A:ASP58
|
3.7
|
0.7
|
1.0
|
HA
|
A:ASP56
|
3.7
|
0.5
|
1.0
|
CB
|
A:ASP58
|
3.8
|
0.8
|
1.0
|
CG1
|
A:ILE63
|
3.9
|
0.4
|
1.0
|
N
|
A:ILE63
|
3.9
|
0.5
|
1.0
|
CA
|
A:ILE63
|
3.9
|
0.5
|
1.0
|
HG13
|
A:ILE63
|
4.0
|
0.5
|
1.0
|
CG
|
A:ASN60
|
4.0
|
0.9
|
1.0
|
ND2
|
A:ASN60
|
4.0
|
1.6
|
1.0
|
N
|
A:THR62
|
4.1
|
0.5
|
1.0
|
CB
|
A:ASP56
|
4.1
|
0.5
|
1.0
|
CG
|
A:GLU67
|
4.1
|
0.6
|
1.0
|
HG2
|
A:GLU67
|
4.1
|
0.7
|
1.0
|
HB2
|
A:ASP58
|
4.1
|
0.8
|
1.0
|
CA
|
A:THR62
|
4.2
|
0.5
|
1.0
|
HB2
|
A:ASP56
|
4.3
|
0.5
|
1.0
|
HB3
|
A:ASP58
|
4.3
|
0.8
|
1.0
|
CA
|
A:ASP56
|
4.4
|
0.5
|
1.0
|
HB
|
A:THR62
|
4.5
|
0.7
|
1.0
|
H
|
A:ASP64
|
4.5
|
0.6
|
1.0
|
N
|
A:ASP58
|
4.6
|
0.8
|
1.0
|
CB
|
A:ILE63
|
4.6
|
0.4
|
1.0
|
HB3
|
A:GLU67
|
4.6
|
0.6
|
1.0
|
H
|
A:ASN60
|
4.6
|
0.8
|
1.0
|
H
|
A:GLY61
|
4.6
|
0.6
|
1.0
|
H
|
A:ALA57
|
4.7
|
0.7
|
1.0
|
H
|
A:GLY59
|
4.7
|
0.9
|
1.0
|
CA
|
A:ASP58
|
4.7
|
0.8
|
1.0
|
H
|
A:ILE63
|
4.8
|
0.5
|
1.0
|
HG3
|
A:GLU67
|
4.9
|
0.7
|
1.0
|
CB
|
A:GLU67
|
4.9
|
0.6
|
1.0
|
CB
|
A:THR62
|
4.9
|
0.6
|
1.0
|
HD21
|
A:ASN60
|
4.9
|
1.8
|
1.0
|
HB3
|
A:ASP56
|
4.9
|
0.6
|
1.0
|
HB2
|
A:GLU67
|
5.0
|
0.6
|
1.0
|
C
|
A:ASP56
|
5.0
|
0.6
|
1.0
|
CD1
|
A:ILE63
|
5.0
|
0.4
|
1.0
|
|
Reference:
Y.Zhang,
Z.Li,
D.B.Sacks,
J.B.Ames.
Structural Basis For CA2+-Induced Activation and Dimerization of Estrogen Receptor Alpha By Calmodulin. J.Biol.Chem. V. 287 9336 2012.
ISSN: ISSN 0021-9258
PubMed: 22275375
DOI: 10.1074/JBC.M111.334797
Page generated: Fri Jul 12 14:07:28 2024
|