Calcium in PDB 2lm5: Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit

The binding sites of Calcium atom in the Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit (pdb code 2lm5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit, PDB code: 2lm5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca500 b:1.0 occ:1.00 OD1 A:ASP116 2.6 1.0 1.0 HB2 A:ASP118 2.6 1.0 1.0 OD2 A:ASP118 2.7 1.0 1.0 O A:THR122 2.7 1.0 1.0 OD1 A:ASP120 2.7 1.0 1.0 OD2 A:ASP127 2.9 1.0 1.0 CG A:ASP118 3.2 1.0 1.0 HA A:LEU123 3.3 1.0 1.0 CB A:ASP118 3.3 1.0 1.0 CG A:ASP120 3.6 1.0 1.0 H A:ASN124 3.6 1.0 1.0 C A:THR122 3.6 1.0 1.0 H A:ASP118 3.6 1.0 1.0 CG A:ASP116 3.7 1.0 1.0 CG A:ASP127 3.9 1.0 1.0 OD2 A:ASP120 3.9 1.0 1.0 HB3 A:ASP118 4.0 1.0 1.0 OD2 A:ASP116 4.1 1.0 1.0 OD1 A:ASP118 4.1 1.0 1.0 CA A:LEU123 4.1 1.0 1.0 N A:ASN124 4.2 1.0 1.0 HB A:THR122 4.2 1.0 1.0 OD1 A:ASN124 4.2 1.0 1.0 HD21 A:LEU123 4.2 1.0 1.0 HB3 A:ASN124 4.2 1.0 1.0 N A:LEU123 4.3 1.0 1.0 CG A:ASN124 4.3 1.0 1.0 OD1 A:ASP127 4.3 1.0 1.0 H A:ASP120 4.3 1.0 1.0 N A:ASP118 4.4 1.0 1.0 H A:GLY121 4.4 1.0 1.0 ND2 A:ASN124 4.5 1.0 1.0 CA A:ASP118 4.5 1.0 1.0 HA A:ASP116 4.5 1.0 1.0 H A:THR122 4.5 1.0 1.0 C A:LEU123 4.5 1.0 1.0 HD22 A:ASN124 4.6 1.0 1.0 CA A:THR122 4.6 1.0 1.0 N A:THR122 4.7 1.0 1.0 CB A:ASN124 4.7 1.0 1.0 HB3 A:ASP120 4.7 1.0 1.0 CB A:ASP120 4.8 1.0 1.0 HG22 A:THR122 4.8 1.0 1.0 HD21 A:ASN124 4.8 1.0 1.0 CB A:THR122 4.9 1.0 1.0 CB A:ASP116 4.9 1.0 1.0

Calcium binding site 2 out of 2 in the Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of CA2+-CIB1 in Complex with the Cytoplasmic Domain of the Integrin Aiib Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:1.0 occ:1.00 OD1 A:ASP165 2.6 1.0 1.0 OD2 A:ASP161 2.6 1.0 1.0 OE1 A:GLU172 2.6 1.0 1.0 OD1 A:ASP163 2.7 1.0 1.0 OD2 A:ASP165 2.8 1.0 1.0 HB3 A:ASP161 2.8 1.0 1.0 O A:THR167 2.8 1.0 1.0 CG A:ASP165 2.9 1.0 1.0 CD A:GLU172 3.0 1.0 1.0 HB2 A:ASP161 3.1 1.0 1.0 OE2 A:GLU172 3.1 1.0 1.0 CB A:ASP161 3.2 1.0 1.0 CG A:ASP161 3.2 1.0 1.0 H A:ASP165 3.5 1.0 1.0 CG A:ASP163 3.7 1.0 1.0 HA A:ILE168 3.7 1.0 1.0 HD22 A:LEU157 3.7 1.0 1.0 OD2 A:ASP163 3.9 1.0 1.0 H A:THR167 3.9 1.0 1.0 C A:THR167 4.0 1.0 1.0 HB3 A:GLU172 4.0 1.0 1.0 HG12 A:ILE168 4.0 1.0 1.0 N A:ASP165 4.1 1.0 1.0 CG A:GLU172 4.1 1.0 1.0 H A:GLY166 4.2 1.0 1.0 CB A:ASP165 4.2 1.0 1.0 HG2 A:GLU172 4.3 1.0 1.0 HB3 A:ASP165 4.3 1.0 1.0 OD1 A:ASP161 4.4 1.0 1.0 HA A:ARG164 4.5 1.0 1.0 H A:ARG164 4.5 1.0 1.0 CB A:GLU172 4.5 1.0 1.0 CA A:ILE168 4.6 1.0 1.0 N A:THR167 4.6 1.0 1.0 N A:ARG164 4.7 1.0 1.0 CA A:ASP161 4.7 1.0 1.0 CA A:ASP165 4.7 1.0 1.0 CD2 A:LEU157 4.7 1.0 1.0 HG22 A:ILE168 4.7 1.0 1.0 HB2 A:GLU172 4.7 1.0 1.0 N A:ILE168 4.8 1.0 1.0 N A:GLY166 4.8 1.0 1.0 HG22 A:VAL176 4.8 1.0 1.0 HB3 A:LEU157 4.9 1.0 1.0 C A:ARG164 4.9 1.0 1.0 H A:ASN169 4.9 1.0 1.0 CA A:ARG164 4.9 1.0 1.0 HD21 A:LEU157 4.9 1.0 1.0 CA A:THR167 5.0 1.0 1.0 HB2 A:ASP165 5.0 1.0 1.0 HD22 A:ASN169 5.0 1.0 1.0 HG1 A:THR167 5.0 1.0 1.0

H.Huang, H.J.Vogel. Structural Basis For the Activation of Platelet Integrin Alphaiib-BETA3 By Calcium- and Integrin-Binding Protein 1. J.Am.Chem.Soc. V. 134 3864 2012.
ISSN: ISSN 0002-7863
PubMed: 22283712
DOI: 10.1021/JA2111306