Calcium in PDB 2lqc: uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit
Calcium Binding Sites:
The binding sites of Calcium atom in the uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit
(pdb code 2lqc). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit, PDB code: 2lqc:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 2lqc
Go back to
Calcium Binding Sites List in 2lqc
Calcium binding site 1 out
of 2 in the uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca101
b:0.0
occ:1.00
|
OD2
|
A:ASP24
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU31
|
2.7
|
0.0
|
1.0
|
O
|
A:THR26
|
2.7
|
0.0
|
1.0
|
OD1
|
A:ASP24
|
2.7
|
0.0
|
1.0
|
CG
|
A:ASP24
|
2.9
|
0.0
|
1.0
|
OG1
|
A:THR28
|
3.0
|
0.0
|
1.0
|
OD2
|
A:ASP22
|
3.1
|
0.0
|
1.0
|
OG1
|
A:THR26
|
3.1
|
0.0
|
1.0
|
C
|
A:THR26
|
3.2
|
0.0
|
1.0
|
CD
|
A:GLU31
|
3.4
|
0.0
|
1.0
|
OE1
|
A:GLU31
|
3.5
|
0.0
|
1.0
|
HG1
|
A:THR28
|
3.6
|
0.0
|
1.0
|
HB
|
A:THR26
|
3.7
|
0.0
|
1.0
|
HG1
|
A:THR26
|
3.7
|
0.0
|
1.0
|
H
|
A:THR26
|
3.7
|
0.0
|
1.0
|
CB
|
A:THR26
|
3.8
|
0.0
|
1.0
|
CG
|
A:ASP22
|
3.8
|
0.0
|
1.0
|
HA
|
A:ILE27
|
3.8
|
0.0
|
1.0
|
OD1
|
A:ASP22
|
3.8
|
0.0
|
1.0
|
OD1
|
A:ASP20
|
3.9
|
0.0
|
1.0
|
N
|
A:ILE27
|
3.9
|
0.0
|
1.0
|
CA
|
A:THR26
|
4.0
|
0.0
|
1.0
|
C
|
A:ILE27
|
4.1
|
0.0
|
1.0
|
N
|
A:THR28
|
4.1
|
0.0
|
1.0
|
CB
|
A:THR28
|
4.1
|
0.0
|
1.0
|
CA
|
A:ILE27
|
4.2
|
0.0
|
1.0
|
HB
|
A:THR28
|
4.2
|
0.0
|
1.0
|
H
|
A:THR28
|
4.2
|
0.0
|
1.0
|
HG23
|
A:THR62
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASP24
|
4.2
|
0.0
|
1.0
|
N
|
A:THR26
|
4.2
|
0.0
|
1.0
|
HB3
|
A:ASP24
|
4.3
|
0.0
|
1.0
|
HB
|
A:THR62
|
4.3
|
0.0
|
1.0
|
H
|
A:ASP24
|
4.4
|
0.0
|
1.0
|
O
|
A:ILE27
|
4.5
|
0.0
|
1.0
|
HG22
|
A:THR62
|
4.6
|
0.0
|
1.0
|
H
|
A:ILE27
|
4.6
|
0.0
|
1.0
|
CG
|
A:GLU31
|
4.7
|
0.0
|
1.0
|
CA
|
A:THR28
|
4.7
|
0.0
|
1.0
|
HG3
|
A:GLU31
|
4.7
|
0.0
|
1.0
|
CG2
|
A:THR62
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ASP24
|
4.9
|
0.0
|
1.0
|
HA
|
A:THR26
|
5.0
|
0.0
|
1.0
|
CG
|
A:ASP20
|
5.0
|
0.0
|
1.0
|
HA
|
A:ASP20
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 2lqc
Go back to
Calcium Binding Sites List in 2lqc
Calcium binding site 2 out
of 2 in the uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of uc(Nmr) Solution Structure of A CA2+-Calmodulin with A Binding Motif (Nscate) Peptide From the N-Terminal Cytoplasmic Domain of the L-Type Voltage-Cated Calcium Channel ALPHA1C Subunit within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca102
b:0.0
occ:1.00
|
H
|
A:ASP58
|
2.4
|
0.0
|
1.0
|
OD2
|
A:ASP64
|
2.9
|
0.0
|
1.0
|
H
|
A:ALA57
|
2.9
|
0.0
|
1.0
|
O
|
A:THR62
|
3.0
|
0.0
|
1.0
|
HB2
|
A:ASP58
|
3.1
|
0.0
|
1.0
|
HB1
|
A:ALA57
|
3.2
|
0.0
|
1.0
|
N
|
A:ASP58
|
3.4
|
0.0
|
1.0
|
OE2
|
A:GLU67
|
3.4
|
0.0
|
1.0
|
N
|
A:ALA57
|
3.5
|
0.0
|
1.0
|
HA
|
A:ASP56
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASP64
|
3.5
|
0.0
|
1.0
|
OD1
|
A:ASP64
|
3.7
|
0.0
|
1.0
|
H
|
A:GLY59
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP64
|
3.8
|
0.0
|
1.0
|
CB
|
A:ASP58
|
3.9
|
0.0
|
1.0
|
HB2
|
A:ASP56
|
4.0
|
0.0
|
1.0
|
OE1
|
A:GLU67
|
4.0
|
0.0
|
1.0
|
HA
|
A:ILE63
|
4.0
|
0.0
|
1.0
|
H
|
A:ASN60
|
4.0
|
0.0
|
1.0
|
CD
|
A:GLU67
|
4.1
|
0.0
|
1.0
|
OD2
|
A:ASP58
|
4.1
|
0.0
|
1.0
|
CB
|
A:ALA57
|
4.1
|
0.0
|
1.0
|
C
|
A:THR62
|
4.1
|
0.0
|
1.0
|
CA
|
A:ALA57
|
4.1
|
0.0
|
1.0
|
C
|
A:ASP56
|
4.2
|
0.0
|
1.0
|
H
|
A:THR62
|
4.2
|
0.0
|
1.0
|
CG
|
A:ASP58
|
4.2
|
0.0
|
1.0
|
CA
|
A:ASP58
|
4.2
|
0.0
|
1.0
|
CA
|
A:ASP56
|
4.2
|
0.0
|
1.0
|
C
|
A:ALA57
|
4.2
|
0.0
|
1.0
|
OG1
|
A:THR62
|
4.3
|
0.0
|
1.0
|
HB3
|
A:ASN60
|
4.3
|
0.0
|
1.0
|
N
|
A:ASP64
|
4.5
|
0.0
|
1.0
|
N
|
A:GLY59
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASP56
|
4.6
|
0.0
|
1.0
|
HB2
|
A:ALA57
|
4.6
|
0.0
|
1.0
|
HG1
|
A:THR62
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP64
|
4.8
|
0.0
|
1.0
|
CA
|
A:ILE63
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ALA57
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASP58
|
4.9
|
0.0
|
1.0
|
HD13
|
A:ILE63
|
4.9
|
0.0
|
1.0
|
N
|
A:ILE63
|
4.9
|
0.0
|
1.0
|
C
|
A:ASP58
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASN60
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASP64
|
4.9
|
0.0
|
1.0
|
N
|
A:THR62
|
4.9
|
0.0
|
1.0
|
HB3
|
A:ASP56
|
5.0
|
0.0
|
1.0
|
N
|
A:ASN60
|
5.0
|
0.0
|
1.0
|
OD1
|
A:ASP58
|
5.0
|
0.0
|
1.0
|
|
Reference:
Z.Liu,
H.J.Vogel.
Structural Basis For the Regulation of L-Type Voltage-Gated Calcium Channels: Interactions Between the N-Terminal Cytoplasmic Domain and Ca(2+)-Calmodulin. Front Mol Neurosci V. 5 38 2012.
PubMed: 22518098
DOI: 10.3389/FNMOL.2012.00038
Page generated: Fri Jul 12 14:09:55 2024
|