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Calcium in PDB 2lv6: The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data

Enzymatic activity of The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data

All present enzymatic activity of The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data:
2.7.11.18;

Calcium Binding Sites:

The binding sites of Calcium atom in the The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data (pdb code 2lv6). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data, PDB code: 2lv6:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 2lv6

Go back to Calcium Binding Sites List in 2lv6
Calcium binding site 1 out of 4 in the The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:0.0
occ:1.00
 OD1 A:ASP56 2.3 1.0 1.0
OD1 A:ASP58 2.4 1.0 1.0
OD1 A:ASN60 2.4 1.0 1.0
O A:THR62 2.4 1.0 1.0
OE1 A:GLU67 2.5 1.0 1.0
OE2 A:GLU67 2.6 1.0 1.0
CD A:GLU67 2.9 1.0 1.0
CG A:ASN60 3.3 1.0 1.0
H A:ASP58 3.4 0.0 1.0
CG A:ASP56 3.4 1.0 1.0
CG A:ASP58 3.4 1.0 1.0
H A:ASN60 3.4 0.0 1.0
HD22 A:ASN60 3.5 1.0 1.0
H A:THR62 3.6 0.0 1.0
HA A:ASP56 3.6 0.0 1.0
C A:THR62 3.6 1.0 1.0
HA A:ILE63 3.6 0.0 1.0
H A:ASP64 3.8 0.0 1.0
ND2 A:ASN60 3.8 1.0 1.0
OD2 A:ASP58 3.8 1.0 1.0
HG1 A:THR62 3.9 0.0 1.0
OD2 A:ASP56 4.2 1.0 1.0
N A:ASP58 4.3 1.0 1.0
N A:THR62 4.3 1.0 1.0
N A:ASN60 4.3 1.0 1.0
CA A:ASP56 4.3 1.0 1.0
CB A:ASP56 4.3 1.0 1.0
CG A:GLU67 4.4 1.0 1.0
CA A:ILE63 4.4 1.0 1.0
H A:GLY59 4.4 0.0 1.0
N A:ILE63 4.5 1.0 1.0
CB A:ASN60 4.5 1.0 1.0
N A:ASP64 4.5 1.0 1.0
CA A:THR62 4.5 1.0 1.0
C A:ASP56 4.5 1.0 1.0
HB2 A:ASP56 4.5 0.0 1.0
H A:GLY61 4.6 0.0 1.0
H A:ALA57 4.6 0.0 1.0
CB A:ASP58 4.6 1.0 1.0
HB3 A:ASN60 4.7 0.0 1.0
N A:ALA57 4.7 1.0 1.0
OG1 A:THR62 4.7 1.0 1.0
HD21 A:ASN60 4.7 1.0 1.0
N A:GLY59 4.7 1.0 1.0
CA A:ASP58 4.7 1.0 1.0
CA A:ASN60 4.8 1.0 1.0
HB3 A:ASP64 4.8 0.0 1.0
HG3 A:GLU67 4.8 0.0 1.0
N A:GLY61 4.9 1.0 1.0
C A:ILE63 4.9 1.0 1.0
HG2 A:GLU67 4.9 0.0 1.0
C A:ASP58 4.9 1.0 1.0
HB2 A:GLU67 4.9 0.0 1.0
CG A:ASP64 5.0 1.0 1.0

Calcium binding site 2 out of 4 in 2lv6

Go back to Calcium Binding Sites List in 2lv6
Calcium binding site 2 out of 4 in the The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:0.0
occ:1.00
 O A:THR26 2.3 1.0 1.0
OD1 A:ASP24 2.4 1.0 1.0
OD1 A:ASP22 2.4 1.0 1.0
OD1 A:ASP20 2.4 1.0 1.0
OE2 A:GLU31 2.5 1.0 1.0
OE1 A:GLU31 2.6 1.0 1.0
CD A:GLU31 2.9 1.0 1.0
H A:THR26 3.2 0.0 1.0
HA A:ASP20 3.3 0.0 1.0
H A:ASP24 3.3 0.0 1.0
CG A:ASP24 3.3 1.0 1.0
CG A:ASP22 3.4 1.0 1.0
HG1 A:THR26 3.5 0.0 1.0
C A:THR26 3.5 1.0 1.0
CG A:ASP20 3.5 1.0 1.0
OD2 A:ASP22 3.7 1.0 1.0
H A:ASP22 3.7 0.0 1.0
HA A:ILE27 3.8 0.0 1.0
HG23 A:THR28 3.8 1.0 1.0
OD2 A:ASP24 3.9 1.0 1.0
OG1 A:THR26 4.0 1.0 1.0
N A:THR26 4.0 1.0 1.0
CA A:ASP20 4.1 1.0 1.0
N A:ASP24 4.2 1.0 1.0
H A:THR28 4.3 0.0 1.0
CB A:ASP20 4.3 1.0 1.0
CA A:THR26 4.3 1.0 1.0
CB A:ASP24 4.3 1.0 1.0
OD2 A:ASP20 4.3 1.0 1.0
CG A:GLU31 4.4 1.0 1.0
HB3 A:ASP24 4.4 0.0 1.0
H A:GLY23 4.4 0.0 1.0
H A:GLY25 4.5 0.0 1.0
N A:ILE27 4.5 1.0 1.0
HB2 A:ASP20 4.5 0.0 1.0
C A:ASP20 4.5 1.0 1.0
N A:ASP22 4.5 1.0 1.0
CA A:ASP24 4.6 1.0 1.0
CA A:ILE27 4.6 1.0 1.0
CB A:ASP22 4.7 1.0 1.0
N A:GLY25 4.7 1.0 1.0
HG3 A:GLU31 4.7 0.0 1.0
N A:GLY23 4.7 1.0 1.0
H A:LYS21 4.7 0.0 1.0
C A:ASP24 4.8 1.0 1.0
N A:LYS21 4.8 1.0 1.0
CB A:THR26 4.8 1.0 1.0
CG2 A:THR28 4.8 1.0 1.0
HG2 A:GLU31 4.9 0.0 1.0
CA A:ASP22 4.9 1.0 1.0
N A:THR28 5.0 1.0 1.0

Calcium binding site 3 out of 4 in 2lv6

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Calcium binding site 3 out of 4 in the The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca203

b:0.0
occ:1.00
 OD1 A:ASP93 2.3 1.0 1.0
O A:PHE99 2.3 1.0 1.0
OD1 A:ASP95 2.3 1.0 1.0
OE1 A:GLU104 2.5 1.0 1.0
OD1 A:ASN97 2.5 1.0 1.0
OE2 A:GLU104 2.5 1.0 1.0
CD A:GLU104 2.8 1.0 1.0
H A:ASN97 3.3 0.0 1.0
CG A:ASP95 3.3 1.0 1.0
CG A:ASN97 3.4 1.0 1.0
H A:ASP95 3.4 0.0 1.0
CG A:ASP93 3.4 1.0 1.0
H A:PHE99 3.5 0.0 1.0
HA A:ASP93 3.5 0.0 1.0
C A:PHE99 3.5 1.0 1.0
OD2 A:ASP95 3.6 1.0 1.0
HA A:ILE100 3.6 0.0 1.0
H A:SER101 3.9 0.0 1.0
HD22 A:ASN97 3.9 1.0 1.0
ND2 A:ASN97 4.0 1.0 1.0
H A:GLY96 4.1 0.0 1.0
HB2 A:PHE99 4.1 0.0 1.0
N A:ASN97 4.1 1.0 1.0
N A:PHE99 4.2 1.0 1.0
OD2 A:ASP93 4.2 1.0 1.0
CA A:ASP93 4.2 1.0 1.0
N A:ASP95 4.2 1.0 1.0
CG A:GLU104 4.3 1.0 1.0
CB A:ASP93 4.3 1.0 1.0
CB A:ASN97 4.4 1.0 1.0
CA A:PHE99 4.4 1.0 1.0
C A:ASP93 4.4 1.0 1.0
HB3 A:ASN97 4.4 0.0 1.0
H A:LYS94 4.5 0.0 1.0
H A:GLY98 4.5 0.0 1.0
N A:ILE100 4.5 1.0 1.0
CA A:ILE100 4.5 1.0 1.0
N A:GLY96 4.5 1.0 1.0
CB A:ASP95 4.5 1.0 1.0
N A:LYS94 4.5 1.0 1.0
N A:SER101 4.6 1.0 1.0
HB2 A:ASP93 4.6 0.0 1.0
HB3 A:SER101 4.6 0.0 1.0
CA A:ASP95 4.7 1.0 1.0
HG3 A:GLU104 4.7 0.0 1.0
CA A:ASN97 4.7 1.0 1.0
CB A:PHE99 4.8 1.0 1.0
C A:ASP95 4.8 1.0 1.0
HG2 A:GLU104 4.8 0.0 1.0
N A:GLY98 4.9 1.0 1.0
HB3 A:ASP95 4.9 0.0 1.0
HD21 A:ASN97 4.9 1.0 1.0
HB2 A:GLU104 4.9 0.0 1.0
O A:ASP93 4.9 1.0 1.0

Calcium binding site 4 out of 4 in 2lv6

Go back to Calcium Binding Sites List in 2lv6
Calcium binding site 4 out of 4 in the The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Complex Between Ca-Calmodulin and Skeletal Muscle Myosin Light Chain Kinase From Combination of uc(Nmr) and Aqueous and Contrast-Matched Saxs Data within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca204

b:0.0
occ:1.00
 OD1 A:ASP129 2.3 1.0 1.0
O A:GLN135 2.4 1.0 1.0
OD1 A:ASP133 2.4 1.0 1.0
OE1 A:GLU140 2.5 1.0 1.0
OD1 A:ASP131 2.6 0.0 1.0
OE2 A:GLU140 2.6 1.0 1.0
CD A:GLU140 2.9 1.0 1.0
CG A:ASP131 3.2 0.0 1.0
H A:ASP133 3.2 0.0 1.0
OD2 A:ASP131 3.3 0.0 1.0
CG A:ASP133 3.3 1.0 1.0
HA A:ASP129 3.4 0.0 1.0
CG A:ASP129 3.4 1.0 1.0
H A:GLN135 3.4 0.0 1.0
H A:ASP131 3.5 0.0 1.0
C A:GLN135 3.5 1.0 1.0
HA A:VAL136 3.6 0.0 1.0
H A:ASN137 3.6 0.0 1.0
OD2 A:ASP133 3.7 1.0 1.0
H A:GLY132 4.0 0.0 1.0
N A:ASP133 4.1 1.0 1.0
HG3 A:GLN135 4.1 0.0 1.0
CA A:ASP129 4.1 1.0 1.0
N A:GLN135 4.2 1.0 1.0
OD2 A:ASP129 4.2 1.0 1.0
CB A:ASP129 4.2 1.0 1.0
N A:ASP131 4.3 1.0 1.0
H A:GLY134 4.3 0.0 1.0
HB2 A:ASP129 4.4 0.0 1.0
CA A:VAL136 4.4 1.0 1.0
N A:VAL136 4.4 1.0 1.0
CG A:GLU140 4.4 1.0 1.0
CB A:ASP133 4.4 1.0 1.0
N A:ASN137 4.4 1.0 1.0
N A:GLY132 4.4 1.0 1.0
CB A:ASP131 4.4 1.0 1.0
C A:ASP129 4.5 1.0 1.0
HG2 A:GLN135 4.5 0.0 1.0
CA A:GLN135 4.5 1.0 1.0
HB3 A:ASN137 4.6 0.0 1.0
CA A:ASP131 4.6 1.0 1.0
CA A:ASP133 4.6 1.0 1.0
HB3 A:ASP133 4.6 0.0 1.0
H A:ILE130 4.6 0.0 1.0
N A:GLY134 4.7 1.0 1.0
N A:ILE130 4.7 1.0 1.0
C A:ASP131 4.8 1.0 1.0
CG A:GLN135 4.8 1.0 1.0
HG3 A:GLU140 4.9 0.0 1.0
HG2 A:GLU140 4.9 0.0 1.0
C A:VAL136 4.9 1.0 1.0
C A:ASP133 4.9 1.0 1.0
HD1 A:PHE99 4.9 0.0 1.0
CG A:ASN137 4.9 1.0 1.0
HB2 A:GLU140 4.9 0.0 1.0
O A:ASP129 5.0 1.0 1.0
HB3 A:ASP131 5.0 0.0 1.0

Reference:

A.Grishaev, N.J.Anthis, G.M.Clore. Contrast-Matched Small-Angle X-Ray Scattering From A Heavy-Atom-Labeled Protein in Structure Determination: Application to A Lead-Substituted Calmodulin-Peptide Complex. J.Am.Chem.Soc. V. 134 14686 2012.
ISSN: ISSN 0002-7863
PubMed: 22908850
DOI: 10.1021/JA306359Z
Page generated: Fri Jul 12 14:11:49 2024

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