Calcium in PDB 2lv7: Solution Structure of CA2+-Bound CABP7 N-Terminal Doman
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution Structure of CA2+-Bound CABP7 N-Terminal Doman
(pdb code 2lv7). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Solution Structure of CA2+-Bound CABP7 N-Terminal Doman, PDB code: 2lv7:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 2lv7
Go back to
Calcium Binding Sites List in 2lv7
Calcium binding site 1 out
of 2 in the Solution Structure of CA2+-Bound CABP7 N-Terminal Doman
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution Structure of CA2+-Bound CABP7 N-Terminal Doman within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:0.0
occ:1.00
|
HB2
|
A:ASP48
|
2.3
|
0.0
|
1.0
|
OD1
|
A:ASP46
|
2.4
|
0.0
|
1.0
|
HD22
|
A:ASN50
|
2.5
|
0.0
|
1.0
|
OE2
|
A:GLU57
|
2.6
|
0.0
|
1.0
|
O
|
A:PHE52
|
2.6
|
0.0
|
1.0
|
HE22
|
A:GLN88
|
2.7
|
0.0
|
1.0
|
OD2
|
A:ASP48
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASN50
|
2.8
|
0.0
|
1.0
|
OE1
|
A:GLU57
|
2.8
|
0.0
|
1.0
|
CD
|
A:GLU57
|
3.1
|
0.0
|
1.0
|
ND2
|
A:ASN50
|
3.2
|
0.0
|
1.0
|
HE21
|
A:GLN88
|
3.2
|
0.0
|
1.0
|
CB
|
A:ASP48
|
3.2
|
0.0
|
1.0
|
H
|
A:ASP48
|
3.3
|
0.0
|
1.0
|
NE2
|
A:GLN88
|
3.3
|
0.0
|
1.0
|
CG
|
A:ASN50
|
3.3
|
0.0
|
1.0
|
CG
|
A:ASP46
|
3.4
|
0.0
|
1.0
|
CG
|
A:ASP48
|
3.4
|
0.0
|
1.0
|
HA
|
A:ILE53
|
3.6
|
0.0
|
1.0
|
H
|
A:SER54
|
3.7
|
0.0
|
1.0
|
C
|
A:PHE52
|
3.8
|
0.0
|
1.0
|
H
|
A:ASN50
|
3.8
|
0.0
|
1.0
|
OD2
|
A:ASP46
|
3.8
|
0.0
|
1.0
|
HB3
|
A:ASP48
|
3.9
|
0.0
|
1.0
|
N
|
A:ASP48
|
4.0
|
0.0
|
1.0
|
HD21
|
A:ASN50
|
4.0
|
0.0
|
1.0
|
H
|
A:GLY49
|
4.1
|
0.0
|
1.0
|
CA
|
A:ASP48
|
4.1
|
0.0
|
1.0
|
H
|
A:PHE52
|
4.2
|
0.0
|
1.0
|
HB2
|
A:PHE52
|
4.2
|
0.0
|
1.0
|
HA
|
A:ASP46
|
4.2
|
0.0
|
1.0
|
CA
|
A:ILE53
|
4.5
|
0.0
|
1.0
|
N
|
A:SER54
|
4.5
|
0.0
|
1.0
|
OG
|
A:SER54
|
4.5
|
0.0
|
1.0
|
N
|
A:GLY49
|
4.5
|
0.0
|
1.0
|
N
|
A:ILE53
|
4.5
|
0.0
|
1.0
|
CB
|
A:ASP46
|
4.6
|
0.0
|
1.0
|
CG
|
A:GLU57
|
4.6
|
0.0
|
1.0
|
OD1
|
A:ASP48
|
4.6
|
0.0
|
1.0
|
CD
|
A:GLN88
|
4.6
|
0.0
|
1.0
|
C
|
A:ASP48
|
4.6
|
0.0
|
1.0
|
N
|
A:ASN50
|
4.7
|
0.0
|
1.0
|
HB2
|
A:SER54
|
4.7
|
0.0
|
1.0
|
H
|
A:ARG47
|
4.7
|
0.0
|
1.0
|
CA
|
A:PHE52
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASN50
|
4.8
|
0.0
|
1.0
|
CA
|
A:ASP46
|
4.8
|
0.0
|
1.0
|
N
|
A:PHE52
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ASP46
|
4.8
|
0.0
|
1.0
|
N
|
A:ARG47
|
4.9
|
0.0
|
1.0
|
C
|
A:ILE53
|
4.9
|
0.0
|
1.0
|
C
|
A:ASP46
|
4.9
|
0.0
|
1.0
|
HG3
|
A:GLU57
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 2lv7
Go back to
Calcium Binding Sites List in 2lv7
Calcium binding site 2 out
of 2 in the Solution Structure of CA2+-Bound CABP7 N-Terminal Doman
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution Structure of CA2+-Bound CABP7 N-Terminal Doman within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:0.0
occ:1.00
|
HA
|
A:ASP82
|
2.3
|
0.0
|
1.0
|
OE2
|
A:GLU93
|
2.5
|
0.0
|
1.0
|
OD1
|
A:ASP82
|
2.5
|
0.0
|
1.0
|
OD1
|
A:ASP86
|
2.5
|
0.0
|
1.0
|
O
|
A:GLN88
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP84
|
2.6
|
0.0
|
1.0
|
HA
|
A:VAL89
|
2.7
|
0.0
|
1.0
|
OE1
|
A:GLU93
|
2.8
|
0.0
|
1.0
|
CD
|
A:GLU93
|
3.0
|
0.0
|
1.0
|
H
|
A:ASP90
|
3.1
|
0.0
|
1.0
|
OD1
|
A:ASP90
|
3.1
|
0.0
|
1.0
|
CA
|
A:ASP82
|
3.2
|
0.0
|
1.0
|
CG
|
A:ASP82
|
3.3
|
0.0
|
1.0
|
HB2
|
A:ASP82
|
3.5
|
0.0
|
1.0
|
CB
|
A:ASP82
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASP84
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP86
|
3.7
|
0.0
|
1.0
|
C
|
A:GLN88
|
3.7
|
0.0
|
1.0
|
CA
|
A:VAL89
|
3.7
|
0.0
|
1.0
|
H
|
A:MET83
|
3.8
|
0.0
|
1.0
|
N
|
A:ASP90
|
3.8
|
0.0
|
1.0
|
H
|
A:ASP84
|
3.8
|
0.0
|
1.0
|
OD2
|
A:ASP84
|
3.9
|
0.0
|
1.0
|
H
|
A:ASP86
|
3.9
|
0.0
|
1.0
|
C
|
A:ASP82
|
4.1
|
0.0
|
1.0
|
H
|
A:GLY85
|
4.1
|
0.0
|
1.0
|
OD2
|
A:ASP86
|
4.2
|
0.0
|
1.0
|
N
|
A:MET83
|
4.2
|
0.0
|
1.0
|
N
|
A:VAL89
|
4.2
|
0.0
|
1.0
|
N
|
A:ASP82
|
4.2
|
0.0
|
1.0
|
C
|
A:VAL89
|
4.3
|
0.0
|
1.0
|
HG11
|
A:VAL89
|
4.3
|
0.0
|
1.0
|
CG
|
A:ASP90
|
4.3
|
0.0
|
1.0
|
O
|
A:LEU81
|
4.3
|
0.0
|
1.0
|
HB2
|
A:ASP90
|
4.3
|
0.0
|
1.0
|
HG21
|
A:VAL89
|
4.4
|
0.0
|
1.0
|
CG
|
A:GLU93
|
4.5
|
0.0
|
1.0
|
OD2
|
A:ASP82
|
4.5
|
0.0
|
1.0
|
HB3
|
A:ASP82
|
4.6
|
0.0
|
1.0
|
C
|
A:LEU81
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP84
|
4.7
|
0.0
|
1.0
|
H
|
A:GLN88
|
4.7
|
0.0
|
1.0
|
HG2
|
A:MET83
|
4.7
|
0.0
|
1.0
|
CB
|
A:ASP90
|
4.7
|
0.0
|
1.0
|
HB2
|
A:GLU93
|
4.7
|
0.0
|
1.0
|
CB
|
A:VAL89
|
4.8
|
0.0
|
1.0
|
N
|
A:ASP86
|
4.8
|
0.0
|
1.0
|
CB
|
A:ASP86
|
4.9
|
0.0
|
1.0
|
HB3
|
A:ASP86
|
4.9
|
0.0
|
1.0
|
HG3
|
A:GLU93
|
4.9
|
0.0
|
1.0
|
CB
|
A:ASP84
|
4.9
|
0.0
|
1.0
|
H
|
A:ASP82
|
4.9
|
0.0
|
1.0
|
CA
|
A:ASP90
|
4.9
|
0.0
|
1.0
|
N
|
A:GLY85
|
4.9
|
0.0
|
1.0
|
CG1
|
A:VAL89
|
5.0
|
0.0
|
1.0
|
O
|
A:ASP82
|
5.0
|
0.0
|
1.0
|
|
Reference:
H.V.Mccue,
P.Patel,
A.P.Herbert,
L.Y.Lian,
R.D.Burgoyne,
L.P.Haynes.
Solution uc(Nmr) Structure of the CA2+-Bound N-Terminal Domain of CABP7: A Regulator of Golgi Trafficking. J.Biol.Chem. V. 287 38231 2012.
ISSN: ISSN 0021-9258
PubMed: 22989873
DOI: 10.1074/JBC.M112.402289
Page generated: Fri Jul 12 14:12:17 2024
|