Calcium in PDB 2m55: uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin

The binding sites of Calcium atom in the uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin (pdb code 2m55). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin, PDB code: 2m55:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca300 b:0.0 occ:1.00 HB2 A:ASP22 2.0 0.0 1.0 O A:THR26 2.2 0.0 1.0 OE1 A:GLU31 2.3 0.0 1.0 OD2 A:ASP24 2.7 0.0 1.0 OD2 A:ASP22 2.7 0.0 1.0 OD1 A:ASP20 2.7 0.0 1.0 OE2 A:GLU31 2.8 0.0 1.0 OD1 A:ASP24 2.8 0.0 1.0 CD A:GLU31 2.8 0.0 1.0 CB A:ASP22 2.9 0.0 1.0 HG23 A:THR28 2.9 0.0 1.0 CG A:ASP24 3.0 0.0 1.0 HG1 A:THR26 3.1 0.0 1.0 CG A:ASP22 3.1 0.0 1.0 HB3 A:ASP22 3.2 0.0 1.0 C A:THR26 3.3 0.0 1.0 HA A:ILE27 3.3 0.0 1.0 OG1 A:THR26 3.4 0.0 1.0 H A:THR28 3.5 0.0 1.0 HG21 A:THR28 3.6 0.0 1.0 CG A:ASP20 3.7 0.0 1.0 CG2 A:THR28 3.7 0.0 1.0 H A:THR26 3.7 0.0 1.0 H A:ASP22 3.9 0.0 1.0 N A:THR28 4.0 0.0 1.0 OD2 A:ASP20 4.0 0.0 1.0 H A:ASP24 4.0 0.0 1.0 CA A:ILE27 4.0 0.0 1.0 N A:ILE27 4.1 0.0 1.0 CA A:ASP22 4.2 0.0 1.0 OG1 A:THR28 4.2 0.0 1.0 CA A:THR26 4.2 0.0 1.0 CG A:GLU31 4.3 0.0 1.0 C A:ILE27 4.3 0.0 1.0 OD1 A:ASP22 4.3 0.0 1.0 N A:THR26 4.4 0.0 1.0 CB A:THR26 4.4 0.0 1.0 N A:ASP22 4.4 0.0 1.0 HG1 A:THR28 4.5 0.0 1.0 CB A:ASP24 4.5 0.0 1.0 HG22 A:THR28 4.5 0.0 1.0 CB A:THR28 4.5 0.0 1.0 HG3 A:GLU31 4.6 0.0 1.0 HA A:ASP20 4.7 0.0 1.0 H A:GLY23 4.7 0.0 1.0 HB3 A:ASP24 4.7 0.0 1.0 HB A:THR26 4.7 0.0 1.0 HG2 A:GLU31 4.8 0.0 1.0 C A:ASP22 4.9 0.0 1.0 N A:ASP24 4.9 0.0 1.0 CA A:THR28 4.9 0.0 1.0 HB2 A:GLU31 4.9 0.0 1.0 HA A:ASP22 5.0 0.0 1.0 H A:ILE27 5.0 0.0 1.0 CB A:ASP20 5.0 0.0 1.0

Calcium binding site 2 out of 4 in the uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:0.0 occ:1.00 OD1 A:ASP58 2.3 0.0 1.0 O A:THR62 2.3 0.0 1.0 OD1 A:ASN60 2.6 0.0 1.0 OD1 A:ASP56 2.6 0.0 1.0 OE2 A:GLU67 2.6 0.0 1.0 OD2 A:ASP58 2.7 0.0 1.0 CG A:ASP58 2.7 0.0 1.0 OE1 A:GLU67 2.7 0.0 1.0 H A:ASP58 3.0 0.0 1.0 CD A:GLU67 3.0 0.0 1.0 HA A:ASP56 3.1 0.0 1.0 CG A:ASP56 3.3 0.0 1.0 HD22 A:ASN60 3.3 0.0 1.0 H A:ASN60 3.3 0.0 1.0 H A:THR62 3.3 0.0 1.0 CG A:ASN60 3.4 0.0 1.0 H A:ALA57 3.4 0.0 1.0 HA A:ILE63 3.5 0.0 1.0 C A:THR62 3.5 0.0 1.0 ND2 A:ASN60 3.6 0.0 1.0 H A:GLY59 3.8 0.0 1.0 H A:ASP64 3.8 0.0 1.0 OD2 A:ASP56 3.9 0.0 1.0 N A:ASP58 3.9 0.0 1.0 CA A:ASP56 3.9 0.0 1.0 OD2 A:ASP64 4.0 0.0 1.0 N A:ALA57 4.0 0.0 1.0 CB A:ASP58 4.0 0.0 1.0 CB A:ASP56 4.1 0.0 1.0 N A:THR62 4.1 0.0 1.0 H A:GLY61 4.2 0.0 1.0 N A:ASN60 4.2 0.0 1.0 HB2 A:ASP56 4.3 0.0 1.0 C A:ASP56 4.3 0.0 1.0 N A:GLY59 4.3 0.0 1.0 HB3 A:ASP58 4.4 0.0 1.0 CA A:ILE63 4.4 0.0 1.0 N A:ILE63 4.4 0.0 1.0 CA A:ASP58 4.4 0.0 1.0 CA A:THR62 4.5 0.0 1.0 HD21 A:ASN60 4.5 0.0 1.0 CG A:GLU67 4.5 0.0 1.0 OG1 A:THR62 4.6 0.0 1.0 N A:ASP64 4.6 0.0 1.0 CB A:ASN60 4.6 0.0 1.0 N A:GLY61 4.6 0.0 1.0 CG A:ASP64 4.6 0.0 1.0 C A:ASP58 4.7 0.0 1.0 HB2 A:ASP58 4.8 0.0 1.0 HB3 A:ASN60 4.8 0.0 1.0 CA A:ASN60 4.8 0.0 1.0 HG3 A:GLU67 4.9 0.0 1.0 C A:ALA57 4.9 0.0 1.0 C A:ILE63 4.9 0.0 1.0 C A:ASN60 5.0 0.0 1.0

Calcium binding site 3 out of 4 in the uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:0.0 occ:1.00 HB2 A:ASP95 2.1 0.0 1.0 OD1 A:ASP93 2.6 0.0 1.0 OD1 A:ASN97 2.7 0.0 1.0 O A:TYR99 2.7 0.0 1.0 OD2 A:ASP95 2.7 0.0 1.0 OE1 A:GLU104 2.7 0.0 1.0 HD22 A:ASN97 2.7 0.0 1.0 OE2 A:GLU104 2.8 0.0 1.0 HA A:ILE100 2.9 0.0 1.0 CD A:GLU104 2.9 0.0 1.0 H A:SER101 3.0 0.0 1.0 CB A:ASP95 3.0 0.0 1.0 H A:ASP95 3.1 0.0 1.0 CG A:ASN97 3.2 0.0 1.0 ND2 A:ASN97 3.2 0.0 1.0 CG A:ASP95 3.3 0.0 1.0 H A:ASN97 3.6 0.0 1.0 HB3 A:ASP95 3.7 0.0 1.0 CG A:ASP93 3.8 0.0 1.0 HG A:SER101 3.8 0.0 1.0 N A:ASP95 3.8 0.0 1.0 H A:GLY96 3.8 0.0 1.0 C A:TYR99 3.8 0.0 1.0 HB2 A:GLU104 3.8 0.0 1.0 CA A:ILE100 3.9 0.0 1.0 N A:SER101 3.9 0.0 1.0 HA A:ASP93 3.9 0.0 1.0 CA A:ASP95 4.0 0.0 1.0 HD21 A:ASN97 4.1 0.0 1.0 CG A:GLU104 4.2 0.0 1.0 HB3 A:GLU104 4.3 0.0 1.0 CB A:GLU104 4.3 0.0 1.0 N A:ILE100 4.3 0.0 1.0 N A:GLY96 4.4 0.0 1.0 C A:ILE100 4.4 0.0 1.0 OG A:SER101 4.4 0.0 1.0 H A:TYR99 4.4 0.0 1.0 OD2 A:ASP93 4.4 0.0 1.0 OD1 A:ASP95 4.5 0.0 1.0 C A:ASP95 4.5 0.0 1.0 N A:ASN97 4.5 0.0 1.0 H A:LYS94 4.5 0.0 1.0 CB A:ASN97 4.6 0.0 1.0 HB3 A:SER101 4.6 0.0 1.0 HG22 A:ILE100 4.6 0.0 1.0 CA A:ASP93 4.6 0.0 1.0 HG12 A:ILE100 4.7 0.0 1.0 HB3 A:ASN97 4.7 0.0 1.0 HG3 A:GLU104 4.7 0.0 1.0 N A:LYS94 4.7 0.0 1.0 C A:ASP93 4.8 0.0 1.0 CB A:ASP93 4.8 0.0 1.0 HA A:ASP95 4.9 0.0 1.0 CB A:SER101 4.9 0.0 1.0 H A:GLY98 4.9 0.0 1.0 HG2 A:GLU104 4.9 0.0 1.0 C A:LYS94 5.0 0.0 1.0 CB A:ILE100 5.0 0.0 1.0 N A:TYR99 5.0 0.0 1.0

Calcium binding site 4 out of 4 in the uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of uc(Nmr) Structure of the Complex of An N-Terminally Acetylated Alpha- Synuclein Peptide with Calmodulin within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca303 b:0.0 occ:1.00 OD1 A:ASP129 2.2 0.0 1.0 OE1 A:GLU140 2.3 0.0 1.0 OD1 A:ASP133 2.3 0.0 1.0 OD1 A:ASP131 2.4 0.0 1.0 O A:GLN135 2.6 0.0 1.0 HA A:ASP129 2.7 0.0 1.0 OE2 A:GLU140 2.7 0.0 1.0 CD A:GLU140 2.8 0.0 1.0 H A:ASP133 3.0 0.0 1.0 H A:GLY132 3.1 0.0 1.0 CG A:ASP133 3.2 0.0 1.0 CG A:ASP129 3.3 0.0 1.0 H A:GLY134 3.3 0.0 1.0 CG A:ASP131 3.4 0.0 1.0 H A:GLN135 3.5 0.0 1.0 H A:ILE130 3.5 0.0 1.0 C A:GLN135 3.6 0.0 1.0 HA A:VAL136 3.6 0.0 1.0 OD2 A:ASP133 3.6 0.0 1.0 CA A:ASP129 3.6 0.0 1.0 H A:ASP131 3.6 0.0 1.0 OD2 A:ASP131 3.7 0.0 1.0 N A:ASP133 3.8 0.0 1.0 N A:GLY132 3.9 0.0 1.0 N A:GLN135 3.9 0.0 1.0 CB A:ASP129 4.0 0.0 1.0 N A:GLY134 4.0 0.0 1.0 N A:ILE130 4.0 0.0 1.0 C A:ASP129 4.1 0.0 1.0 OD2 A:ASP129 4.2 0.0 1.0 HB2 A:ASP129 4.2 0.0 1.0 N A:ASP131 4.3 0.0 1.0 CG A:GLU140 4.3 0.0 1.0 HA2 A:GLY132 4.3 0.0 1.0 N A:VAL136 4.4 0.0 1.0 CB A:ASP133 4.4 0.0 1.0 CA A:GLN135 4.4 0.0 1.0 CA A:VAL136 4.5 0.0 1.0 CA A:GLY132 4.5 0.0 1.0 CA A:ASP133 4.5 0.0 1.0 C A:GLY132 4.5 0.0 1.0 C A:GLY134 4.5 0.0 1.0 HG21 A:VAL136 4.5 0.0 1.0 OD1 A:ASN137 4.6 0.0 1.0 C A:ASP133 4.6 0.0 1.0 HG23 A:VAL136 4.6 0.0 1.0 HG3 A:GLU140 4.6 0.0 1.0 O A:ALA128 4.7 0.0 1.0 H A:ASN137 4.7 0.0 1.0 CB A:ASP131 4.7 0.0 1.0 CA A:GLY134 4.7 0.0 1.0 HD22 A:ASN137 4.7 0.0 1.0 HB3 A:ASP133 4.7 0.0 1.0 C A:ASP131 4.8 0.0 1.0 N A:ASP129 4.8 0.0 1.0 CA A:ASP131 4.8 0.0 1.0 HA2 A:GLY134 4.9 0.0 1.0 HG2 A:GLU140 4.9 0.0 1.0 HB3 A:ASP129 4.9 0.0 1.0 HB3 A:GLU140 5.0 0.0 1.0 HA A:GLN135 5.0 0.0 1.0

J.M.Gruschus, T.L.Yap, S.Pistolesi, A.S.Maltsev, J.C.Lee. uc(Nmr) Structure of Calmodulin Complexed to An N-Terminally Acetylated Alpha-Synuclein Peptide. Biochemistry V. 52 3436 2013.
ISSN: ISSN 0006-2960
PubMed: 23607618
DOI: 10.1021/BI400199P