Atomistry » Calcium » PDB 2m0k-2n8y » 2m5e
Atomistry »
  Calcium »
    PDB 2m0k-2n8y »
      2m5e »

Calcium in PDB 2m5e: Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2 (pdb code 2m5e). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2, PDB code: 2m5e:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2m5e

Go back to Calcium Binding Sites List in 2m5e
Calcium binding site 1 out of 2 in the Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2001

b:0.0
occ:1.00
HB2 A:ASP95 1.9 0.0 1.0
OE1 A:GLU104 2.2 0.0 1.0
OD2 A:ASP95 2.5 0.0 1.0
OD1 A:ASP93 2.5 0.0 1.0
OD1 A:ASN97 2.5 0.0 1.0
O A:LEU99 2.8 0.0 1.0
OE2 A:GLU104 2.8 0.0 1.0
CD A:GLU104 2.8 0.0 1.0
CB A:ASP95 2.9 0.0 1.0
HD22 A:ASN97 2.9 0.0 1.0
H A:ASP95 3.0 0.0 1.0
CG A:ASP95 3.0 0.0 1.0
CG A:ASN97 3.1 0.0 1.0
ND2 A:ASN97 3.3 0.0 1.0
H A:ASN97 3.5 0.0 1.0
CG A:ASP93 3.6 0.0 1.0
HB3 A:ASP95 3.6 0.0 1.0
H A:LEU99 3.7 0.0 1.0
N A:ASP95 3.7 0.0 1.0
CA A:ASP95 3.8 0.0 1.0
H A:GLY96 3.9 0.0 1.0
HA A:ASP93 4.0 0.0 1.0
C A:LEU99 4.0 0.0 1.0
OD2 A:ASP93 4.1 0.0 1.0
HA A:ILE100 4.2 0.0 1.0
HD21 A:ASN97 4.2 0.0 1.0
OD1 A:ASP95 4.3 0.0 1.0
H A:GLY98 4.3 0.0 1.0
CG A:GLU104 4.3 0.0 1.0
N A:GLY96 4.3 0.0 1.0
C A:ASP95 4.3 0.0 1.0
H A:ARG94 4.4 0.0 1.0
N A:ASN97 4.4 0.0 1.0
CB A:ASN97 4.4 0.0 1.0
HB2 A:LEU99 4.5 0.0 1.0
N A:LEU99 4.5 0.0 1.0
HG2 A:GLU104 4.5 0.0 1.0
HB3 A:ASN97 4.6 0.0 1.0
CA A:ASP93 4.7 0.0 1.0
N A:ARG94 4.7 0.0 1.0
CB A:ASP93 4.7 0.0 1.0
HA A:ASP95 4.7 0.0 1.0
CA A:LEU99 4.7 0.0 1.0
C A:ASP93 4.8 0.0 1.0
H A:SER101 4.8 0.0 1.0
HG3 A:GLU104 4.8 0.0 1.0
C A:ARG94 4.9 0.0 1.0
N A:ILE100 5.0 0.0 1.0
CA A:ASN97 5.0 0.0 1.0
N A:GLY98 5.0 0.0 1.0

Calcium binding site 2 out of 2 in 2m5e

Go back to Calcium Binding Sites List in 2m5e
Calcium binding site 2 out of 2 in the Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the C-Domain of Calcium-Saturated Calmodulin Bound to the Iq Motif of NAV1.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2002

b:0.0
occ:1.00
OE2 A:GLU140 2.2 0.0 1.0
OD2 A:ASP133 2.5 0.0 1.0
OD1 A:ASP129 2.5 0.0 1.0
OD2 A:ASP131 2.5 0.0 1.0
HB2 A:ASP131 2.6 0.0 1.0
H A:ASP131 2.8 0.0 1.0
CD A:GLU140 2.8 0.0 1.0
O A:HIS135 2.9 0.0 1.0
OE1 A:GLU140 2.9 0.0 1.0
CG A:ASP133 3.1 0.0 1.0
OD1 A:ASP133 3.3 0.0 1.0
HA A:ASP129 3.3 0.0 1.0
CG A:ASP131 3.4 0.0 1.0
CB A:ASP131 3.4 0.0 1.0
H A:ASP133 3.5 0.0 1.0
H A:ILE130 3.5 0.0 1.0
N A:ASP131 3.6 0.0 1.0
H A:HIS135 3.6 0.0 1.0
H A:GLY132 3.7 0.0 1.0
CG A:ASP129 3.7 0.0 1.0
CA A:ASP131 4.0 0.0 1.0
C A:HIS135 4.0 0.0 1.0
N A:ILE130 4.1 0.0 1.0
CA A:ASP129 4.2 0.0 1.0
H A:GLY134 4.2 0.0 1.0
N A:GLY132 4.2 0.0 1.0
CG A:GLU140 4.3 0.0 1.0
HB3 A:ASP131 4.3 0.0 1.0
N A:ASP133 4.4 0.0 1.0
HB2 A:HIS135 4.4 0.0 1.0
CB A:ASP129 4.4 0.0 1.0
HA A:ILE136 4.4 0.0 1.0
HB2 A:ASN137 4.5 0.0 1.0
CB A:ASP133 4.5 0.0 1.0
H A:ASN137 4.5 0.0 1.0
C A:ASP129 4.5 0.0 1.0
N A:HIS135 4.5 0.0 1.0
C A:ASP131 4.5 0.0 1.0
HB3 A:ASP129 4.5 0.0 1.0
HG3 A:GLU140 4.6 0.0 1.0
HG2 A:GLU140 4.6 0.0 1.0
OD1 A:ASP131 4.6 0.0 1.0
OD2 A:ASP129 4.7 0.0 1.0
HB3 A:ASP133 4.7 0.0 1.0
C A:ILE130 4.8 0.0 1.0
CA A:HIS135 4.8 0.0 1.0
N A:GLY134 4.9 0.0 1.0
HB A:ILE130 5.0 0.0 1.0
CA A:ASP133 5.0 0.0 1.0
CA A:ILE130 5.0 0.0 1.0
HA A:ASP131 5.0 0.0 1.0

Reference:

M.S.Miller, C.A.Fowler, L.Hovey, D.C.Marx, J.B.Yoder, E.S.Kim, K.M.Tefft, B.C.Waite, M.D.Feldkamp, L.Yu, M.A.Shea. Calcium-Triggered Reversal of Calmodulin on Nested Anti-Parallel Sites in the Iq Motif of the Neuronal Voltage-Dependent Sodium Channel NAV1.2 J.Mol.Biol. 2014.
ISSN: ESSN 1089-8638
Page generated: Sat Dec 12 03:46:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy