Calcium in PDB 2ml1: Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase

The binding sites of Calcium atom in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase (pdb code 2ml1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase, PDB code: 2ml1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:25.0 occ:1.00 OD2 A:ASP8 2.4 50.0 1.0 OD1 A:ASP26 2.4 50.0 1.0 O A:THR4 2.4 25.0 1.0 O A:GLY6 2.5 25.0 1.0 O A:ALA23 2.5 25.0 1.0 O A:GLY21 2.5 25.0 1.0 CG A:ASP26 3.1 25.0 1.0 OD2 A:ASP26 3.1 50.0 1.0 HB2 A:ASP8 3.3 25.0 1.0 CG A:ASP8 3.5 25.0 1.0 H A:THR4 3.5 25.0 1.0 C A:GLY6 3.6 25.0 1.0 C A:THR4 3.6 25.0 1.0 C A:GLY21 3.7 25.0 1.0 C A:ALA23 3.7 25.0 1.0 HA A:ASN7 3.8 25.0 1.0 H A:ASP8 3.8 25.0 1.0 HA A:ASP5 3.9 25.0 1.0 CB A:ASP8 3.9 25.0 1.0 HA3 A:GLY24 3.9 25.0 1.0 HA3 A:GLY22 3.9 25.0 1.0 N A:ASP8 4.0 25.0 1.0 H A:GLY6 4.0 25.0 1.0 HA3 A:GLY3 4.0 25.0 1.0 N A:THR4 4.1 25.0 1.0 C A:GLY22 4.1 25.0 1.0 N A:GLY6 4.1 25.0 1.0 C A:ASN7 4.3 25.0 1.0 N A:ALA23 4.3 25.0 1.0 O A:GLY22 4.3 25.0 1.0 CA A:ASN7 4.3 25.0 1.0 CA A:GLY22 4.4 25.0 1.0 N A:ASN7 4.4 25.0 1.0 C A:ASP5 4.4 25.0 1.0 CB A:ASP26 4.5 25.0 1.0 CA A:ASP5 4.5 25.0 1.0 N A:GLY22 4.5 25.0 1.0 N A:ASP5 4.5 25.0 1.0 H A:ALA23 4.5 25.0 1.0 OD1 A:ASP8 4.5 50.0 1.0 CA A:GLY6 4.5 25.0 1.0 CA A:THR4 4.6 25.0 1.0 CA A:GLY24 4.6 25.0 1.0 CA A:ASP8 4.6 25.0 1.0 N A:GLY24 4.6 25.0 1.0 HB3 A:ASP26 4.6 25.0 1.0 CA A:ALA23 4.7 25.0 1.0 HA2 A:GLY21 4.7 25.0 1.0 C A:GLY24 4.7 25.0 1.0 CA A:GLY21 4.7 25.0 1.0 O A:GLY24 4.8 25.0 1.0 C A:GLY3 4.8 25.0 1.0 HA3 A:GLY21 4.8 25.0 1.0 HB3 A:ASP8 4.8 25.0 1.0 CA A:GLY3 4.8 25.0 1.0 O A:ASN7 4.9 25.0 1.0 CA A:CA203 5.0 25.0 1.0

Calcium binding site 2 out of 6 in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:25.0 occ:1.00 OE1 A:GLU17 2.4 50.0 1.0 OD1 A:ASP35 2.4 50.0 1.0 O A:VAL15 2.4 25.0 1.0 O A:SER13 2.5 25.0 1.0 O A:GLY30 2.5 25.0 1.0 O A:ALA32 2.5 25.0 1.0 OD2 A:ASP35 3.0 50.0 1.0 CG A:ASP35 3.1 25.0 1.0 CD A:GLU17 3.5 25.0 1.0 HA2 A:GLY16 3.6 25.0 1.0 C A:VAL15 3.6 25.0 1.0 C A:SER13 3.7 25.0 1.0 C A:GLY30 3.7 25.0 1.0 HB2 A:GLU17 3.7 25.0 1.0 HG3 A:GLU17 3.8 25.0 1.0 C A:ALA32 3.8 25.0 1.0 HA3 A:GLY33 3.9 25.0 1.0 HA3 A:GLY12 3.9 25.0 1.0 H A:GLU17 4.0 25.0 1.0 CG A:GLU17 4.1 25.0 1.0 H A:SER13 4.1 25.0 1.0 N A:SER13 4.2 25.0 1.0 C A:ASP14 4.2 25.0 1.0 HA2 A:GLY30 4.2 25.0 1.0 N A:VAL15 4.3 25.0 1.0 HA3 A:GLY31 4.3 25.0 1.0 N A:GLU17 4.3 25.0 1.0 C A:GLY31 4.3 25.0 1.0 CA A:GLY16 4.3 25.0 1.0 O A:ASP14 4.3 25.0 1.0 CB A:GLU17 4.4 25.0 1.0 N A:ALA32 4.4 25.0 1.0 HA A:ASP14 4.4 25.0 1.0 N A:GLY16 4.4 25.0 1.0 OE2 A:GLU17 4.4 50.0 1.0 C A:GLY12 4.4 25.0 1.0 CA A:GLY30 4.5 25.0 1.0 O A:GLY31 4.5 25.0 1.0 CB A:ASP35 4.5 25.0 1.0 CA A:SER13 4.5 25.0 1.0 C A:GLY16 4.6 25.0 1.0 H A:VAL15 4.6 25.0 1.0 N A:ASP14 4.6 25.0 1.0 CA A:GLY33 4.6 25.0 1.0 O A:GLY33 4.6 25.0 1.0 N A:GLY31 4.6 25.0 1.0 CA A:VAL15 4.6 25.0 1.0 CA A:ASP14 4.6 25.0 1.0 CA A:GLY31 4.6 25.0 1.0 H A:ALA32 4.6 25.0 1.0 N A:GLY33 4.6 25.0 1.0 HD12 A:ILE19 4.7 25.0 1.0 HA3 A:GLY30 4.7 25.0 1.0 CA A:GLY12 4.7 25.0 1.0 C A:GLY33 4.7 25.0 1.0 HG A:SER13 4.7 25.0 1.0 CA A:ALA32 4.8 25.0 1.0 HB3 A:ASP35 4.8 25.0 1.0 CA A:CA204 4.8 25.0 1.0 HG22 A:VAL15 4.9 25.0 1.0 OG A:SER13 4.9 25.0 1.0 O A:GLY12 5.0 25.0 1.0

Calcium binding site 3 out of 6 in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:25.0 occ:1.00 OD1 A:ASP44 2.4 50.0 1.0 OD2 A:ASP26 2.4 50.0 1.0 O A:GLY22 2.6 25.0 1.0 O A:ALA41 2.6 25.0 1.0 O A:GLY24 2.6 25.0 1.0 O A:GLY39 2.6 25.0 1.0 OD2 A:ASP44 2.8 50.0 1.0 CG A:ASP44 3.0 25.0 1.0 CG A:ASP26 3.5 25.0 1.0 O A:GLY40 3.5 25.0 1.0 HB2 A:ASP26 3.7 25.0 1.0 C A:GLY40 3.7 25.0 1.0 C A:ALA41 3.7 25.0 1.0 C A:GLY39 3.7 25.0 1.0 HA3 A:GLY40 3.7 25.0 1.0 C A:GLY22 3.8 25.0 1.0 C A:GLY24 3.8 25.0 1.0 H A:ASP26 3.8 25.0 1.0 HA A:ALA23 3.8 25.0 1.0 C A:ALA23 3.9 25.0 1.0 O A:ALA23 4.0 25.0 1.0 HA3 A:GLY42 4.0 25.0 1.0 HA3 A:GLY21 4.1 25.0 1.0 CA A:GLY40 4.1 25.0 1.0 N A:GLY24 4.1 25.0 1.0 CB A:ASP26 4.1 25.0 1.0 N A:ALA41 4.2 25.0 1.0 O A:GLY42 4.2 25.0 1.0 CA A:ALA23 4.3 25.0 1.0 N A:GLY40 4.3 25.0 1.0 OD1 A:ASP26 4.4 50.0 1.0 N A:ASP26 4.4 25.0 1.0 HA A:ASP25 4.4 25.0 1.0 H A:GLY24 4.4 25.0 1.0 C A:GLY21 4.5 25.0 1.0 CB A:ASP44 4.5 25.0 1.0 C A:GLY42 4.5 25.0 1.0 N A:ALA23 4.5 25.0 1.0 CA A:GLY24 4.5 25.0 1.0 N A:GLY42 4.5 25.0 1.0 CA A:GLY42 4.5 25.0 1.0 O A:ARG43 4.6 25.0 1.0 N A:GLY22 4.6 25.0 1.0 O A:GLY21 4.6 25.0 1.0 CA A:ALA41 4.6 25.0 1.0 CA A:CA205 4.7 25.0 1.0 HA2 A:GLY39 4.7 25.0 1.0 H A:ALA41 4.7 25.0 1.0 N A:ASP25 4.8 25.0 1.0 HB3 A:ASP44 4.8 25.0 1.0 CA A:GLY39 4.8 25.0 1.0 CA A:GLY22 4.8 25.0 1.0 CA A:GLY21 4.8 25.0 1.0 H A:GLY22 4.9 25.0 1.0 CA A:ASP26 4.9 25.0 1.0 CA A:ASP25 4.9 25.0 1.0 C A:ASP25 4.9 25.0 1.0 CA A:CA201 5.0 25.0 1.0 HD11 A:LEU28 5.0 25.0 1.0 HB3 A:ASP26 5.0 25.0 1.0

Calcium binding site 4 out of 6 in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca204 b:25.0 occ:1.00 OD1 A:ASP53 2.4 50.0 1.0 OD2 A:ASP35 2.4 50.0 1.0 O A:GLY33 2.5 25.0 1.0 O A:LEU50 2.5 25.0 1.0 O A:GLY48 2.5 25.0 1.0 O A:GLY31 2.6 25.0 1.0 OD2 A:ASP53 3.1 50.0 1.0 CG A:ASP53 3.1 25.0 1.0 CG A:ASP35 3.5 25.0 1.0 HB2 A:ASP35 3.5 25.0 1.0 C A:GLY48 3.7 25.0 1.0 C A:LEU50 3.7 25.0 1.0 C A:GLY33 3.7 25.0 1.0 C A:GLY31 3.7 25.0 1.0 H A:ASP35 3.8 25.0 1.0 O A:ALA32 3.8 25.0 1.0 C A:ALA32 3.9 25.0 1.0 HA3 A:GLY51 3.9 25.0 1.0 HA3 A:GLY30 3.9 25.0 1.0 C A:GLY49 3.9 25.0 1.0 O A:GLY49 4.0 25.0 1.0 HA A:ALA32 4.0 25.0 1.0 HA A:ASP34 4.0 25.0 1.0 HA3 A:GLY49 4.0 25.0 1.0 CB A:ASP35 4.0 25.0 1.0 N A:ASP35 4.2 25.0 1.0 N A:LEU50 4.2 25.0 1.0 N A:GLY33 4.3 25.0 1.0 C A:GLY30 4.3 25.0 1.0 O A:GLY30 4.3 25.0 1.0 CA A:GLY49 4.4 25.0 1.0 CA A:ALA32 4.4 25.0 1.0 OD1 A:ASP35 4.4 50.0 1.0 N A:GLY49 4.4 25.0 1.0 HA2 A:GLY48 4.5 25.0 1.0 N A:ALA32 4.5 25.0 1.0 N A:GLY31 4.5 25.0 1.0 N A:GLY51 4.6 25.0 1.0 CA A:GLY51 4.6 25.0 1.0 CA A:LEU50 4.6 25.0 1.0 CA A:GLY33 4.6 25.0 1.0 CB A:ASP53 4.6 25.0 1.0 H A:LEU50 4.6 25.0 1.0 N A:ASP34 4.6 0.0 1.0 CA A:GLY48 4.6 25.0 1.0 CA A:ASP34 4.6 25.0 1.0 O A:GLY51 4.6 25.0 1.0 CA A:GLY30 4.7 25.0 1.0 C A:ASP34 4.7 25.0 1.0 C A:GLY51 4.7 25.0 1.0 H A:GLY33 4.7 25.0 1.0 CA A:GLY31 4.8 25.0 1.0 HA3 A:GLY48 4.8 25.0 1.0 CA A:ASP35 4.8 25.0 1.0 HB3 A:ASP53 4.8 25.0 1.0 CA A:CA202 4.8 25.0 1.0 H A:GLY31 4.9 25.0 1.0 HB3 A:ASP35 4.9 25.0 1.0 CA A:CA206 5.0 25.0 1.0

Calcium binding site 5 out of 6 in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca205 b:25.0 occ:1.00 OD1 A:ASP62 2.4 25.0 1.0 OD1 A:ASP73 2.5 50.0 1.0 OD2 A:ASP44 2.5 50.0 1.0 OD2 A:ASP73 2.5 50.0 1.0 O A:ASP62 2.5 25.0 1.0 O A:GLY40 2.5 25.0 1.0 O A:GLY42 2.5 25.0 1.0 CG A:ASP73 2.8 25.0 1.0 HA3 A:GLY39 3.5 25.0 1.0 CG A:ASP62 3.5 25.0 1.0 C A:ASP62 3.5 25.0 1.0 CG A:ASP44 3.6 25.0 1.0 HB2 A:ASP44 3.7 25.0 1.0 HA A:ASP62 3.7 25.0 1.0 C A:GLY40 3.7 25.0 1.0 C A:GLY42 3.8 25.0 1.0 HA A:ARG43 3.8 25.0 1.0 C A:GLY39 4.0 25.0 1.0 CA A:ASP62 4.1 25.0 1.0 N A:GLY40 4.1 25.0 1.0 H A:ASP44 4.1 25.0 1.0 CB A:ASP44 4.2 25.0 1.0 CB A:ASP62 4.2 25.0 1.0 CA A:GLY39 4.3 25.0 1.0 CB A:ASP73 4.3 25.0 1.0 H A:GLY40 4.3 25.0 1.0 HB3 A:SER63 4.3 25.0 1.0 HA A:ALA41 4.3 25.0 1.0 O A:GLY39 4.3 25.0 1.0 OD2 A:ASP62 4.4 25.0 1.0 N A:ASP44 4.4 25.0 1.0 C A:ALA41 4.4 25.0 1.0 HB3 A:ASP62 4.4 25.0 1.0 N A:GLY42 4.5 25.0 1.0 HA A:SER63 4.5 25.0 1.0 CA A:ARG43 4.5 25.0 1.0 C A:ARG43 4.6 25.0 1.0 O A:ALA41 4.6 25.0 1.0 OD1 A:ASP44 4.6 50.0 1.0 CA A:GLY40 4.6 25.0 1.0 N A:ARG43 4.6 25.0 1.0 N A:SER63 4.6 25.0 1.0 CA A:CA203 4.7 25.0 1.0 O A:PHE71 4.7 25.0 1.0 N A:ALA41 4.7 25.0 1.0 HB2 A:ASP73 4.7 25.0 1.0 H A:GLY42 4.7 25.0 1.0 CA A:ALA41 4.7 25.0 1.0 CA A:GLY42 4.8 25.0 1.0 HA2 A:GLY39 4.8 25.0 1.0 HB3 A:ASP73 4.9 25.0 1.0 HA A:ASP73 4.9 25.0 1.0 CA A:ASP44 5.0 25.0 1.0

Calcium binding site 6 out of 6 in the Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Solution Structure of ALGE6R1 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca206 b:25.0 occ:1.00 OD2 A:ASP79 2.4 25.0 1.0 OD2 A:ASP53 2.4 50.0 1.0 OD1 A:ASP83 2.5 50.0 1.0 O A:GLY51 2.5 25.0 1.0 O A:GLY49 2.6 25.0 1.0 OD2 A:ASP83 2.6 50.0 1.0 CG A:ASP83 2.9 25.0 1.0 HB2 A:ASP79 3.1 25.0 1.0 CG A:ASP53 3.4 25.0 1.0 CG A:ASP79 3.5 25.0 1.0 HB2 A:ASP53 3.5 25.0 1.0 H A:ASP53 3.6 25.0 1.0 C A:GLY51 3.7 25.0 1.0 CB A:ASP79 3.8 25.0 1.0 C A:GLY49 3.8 25.0 1.0 HA3 A:GLY48 3.9 25.0 1.0 HA A:ALA52 3.9 25.0 1.0 H A:ASP79 4.0 25.0 1.0 CB A:ASP53 4.0 25.0 1.0 N A:ASP53 4.1 25.0 1.0 C A:LEU50 4.2 25.0 1.0 HB2 A:GLN82 4.3 25.0 1.0 HA A:LEU50 4.3 25.0 1.0 N A:GLY51 4.3 25.0 1.0 OD1 A:ASP53 4.4 50.0 1.0 O A:LEU50 4.4 25.0 1.0 C A:GLY48 4.4 25.0 1.0 N A:GLY49 4.4 25.0 1.0 CB A:ASP83 4.4 25.0 1.0 HB3 A:ASP79 4.5 25.0 1.0 OD1 A:ASP79 4.6 25.0 1.0 CA A:ALA52 4.6 25.0 1.0 N A:ALA52 4.6 25.0 1.0 H A:GLY49 4.6 25.0 1.0 H A:GLY51 4.6 25.0 1.0 C A:ALA52 4.6 25.0 1.0 CA A:LEU50 4.6 25.0 1.0 N A:ASP79 4.6 25.0 1.0 CA A:GLY51 4.6 25.0 1.0 N A:LEU50 4.7 25.0 1.0 CA A:GLY48 4.7 25.0 1.0 O A:GLY48 4.7 25.0 1.0 CA A:ASP53 4.7 25.0 1.0 CA A:GLY49 4.8 25.0 1.0 HZ A:PHE55 4.8 25.0 1.0 CA A:ASP79 4.8 25.0 1.0 HB3 A:ASP53 4.9 25.0 1.0 HB2 A:ASP83 4.9 25.0 1.0 HB3 A:ASP83 4.9 25.0 1.0 HA A:ASP83 4.9 25.0 1.0 CA A:CA204 5.0 25.0 1.0

E.Buchinger, R.Wimmer, F.L.Aachmann. Structural and Functional Characterization of the R-Modules in Alginate C-5 Epimerases ALGE4 and ALGE6 From Azotobacter Vinelandii To Be Published.