Calcium in PDB 2ml2: Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase

The binding sites of Calcium atom in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase (pdb code 2ml2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase, PDB code: 2ml2:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:25.0 occ:1.00 OD1 A:ASP34 2.4 50.0 1.0 OD2 A:ASP16 2.4 50.0 1.0 O A:SER12 2.4 25.0 1.0 O A:GLY31 2.5 25.0 1.0 O A:LEU14 2.5 25.0 1.0 O A:GLY29 2.5 25.0 1.0 OD2 A:ASP34 3.0 50.0 1.0 CG A:ASP34 3.0 25.0 1.0 CG A:ASP16 3.2 25.0 1.0 H A:ASP16 3.2 25.0 1.0 HA3 A:GLY29 3.3 25.0 1.0 C A:GLY29 3.4 25.0 1.0 HA A:ASP13 3.5 25.0 1.0 C A:GLY31 3.5 25.0 1.0 C A:SER12 3.6 25.0 1.0 HB2 A:ASP16 3.6 25.0 1.0 C A:LEU14 3.7 25.0 1.0 H A:SER12 3.8 25.0 1.0 HA3 A:GLY32 3.8 25.0 1.0 CA A:GLY29 3.9 25.0 1.0 OD1 A:ASP16 3.9 50.0 1.0 CB A:ASP16 3.9 25.0 1.0 N A:ASP16 4.0 25.0 1.0 C A:ASP13 4.1 25.0 1.0 CA A:ASP13 4.1 25.0 1.0 N A:LEU14 4.1 25.0 1.0 H A:LEU14 4.2 25.0 1.0 N A:GLY31 4.2 25.0 1.0 HA A:ASP15 4.3 25.0 1.0 N A:ASP13 4.3 25.0 1.0 C A:GLY30 4.3 25.0 1.0 HA2 A:GLY29 4.4 25.0 1.0 N A:GLY30 4.4 25.0 1.0 H A:GLY31 4.4 25.0 1.0 N A:GLY32 4.4 25.0 1.0 CA A:GLY31 4.4 25.0 1.0 CA A:CA203 4.4 25.0 1.0 CB A:ASP34 4.4 25.0 1.0 O A:ASP13 4.5 25.0 1.0 N A:SER12 4.5 25.0 1.0 CA A:GLY32 4.5 25.0 1.0 O A:GLY30 4.6 25.0 1.0 CA A:ASP16 4.6 25.0 1.0 CA A:SER12 4.6 25.0 1.0 CA A:LEU14 4.6 25.0 1.0 HB3 A:SER12 4.7 25.0 1.0 N A:ASP15 4.7 25.0 1.0 HB3 A:ASP34 4.7 25.0 1.0 CA A:ASP15 4.8 25.0 1.0 C A:ASP15 4.8 25.0 1.0 O A:GLY32 4.8 25.0 1.0 C A:GLY32 4.9 25.0 1.0 HB3 A:ASP16 4.9 25.0 1.0 HA3 A:GLY31 4.9 25.0 1.0 CA A:GLY30 4.9 25.0 1.0 HA A:ASP34 5.0 25.0 1.0

Calcium binding site 2 out of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:25.0 occ:1.00 OD1 A:ASP43 2.4 50.0 1.0 O A:LEU23 2.4 25.0 1.0 OE1 A:GLU26 2.4 75.0 1.0 O A:THR21 2.5 25.0 1.0 O A:GLY38 2.6 25.0 1.0 O A:GLY40 2.6 25.0 1.0 CG A:ASP43 3.0 25.0 1.0 OD2 A:ASP43 3.2 50.0 1.0 O A:GLU25 3.2 25.0 1.0 H A:GLU25 3.5 25.0 1.0 C A:GLY38 3.6 25.0 1.0 HA3 A:GLY20 3.6 25.0 1.0 HA2 A:GLY38 3.7 25.0 1.0 C A:LEU23 3.7 25.0 1.0 CD A:GLU26 3.7 25.0 1.0 C A:THR21 3.7 25.0 1.0 C A:GLY40 3.8 25.0 1.0 HA3 A:GLY38 3.9 25.0 1.0 HA3 A:GLY41 3.9 25.0 1.0 CA A:GLY38 4.0 25.0 1.0 C A:GLY20 4.0 25.0 1.0 O A:GLY20 4.1 25.0 1.0 HA2 A:GLY24 4.2 25.0 1.0 N A:THR21 4.2 25.0 1.0 N A:LEU23 4.2 25.0 1.0 H A:LEU23 4.2 25.0 1.0 OE2 A:GLU26 4.3 75.0 1.0 C A:GLU25 4.3 25.0 1.0 N A:GLU25 4.3 25.0 1.0 CA A:GLY20 4.3 25.0 1.0 CB A:ASP43 4.4 25.0 1.0 HB3 A:LEU23 4.4 25.0 1.0 HA A:ASP43 4.4 25.0 1.0 HB2 A:GLU26 4.4 25.0 1.0 CA A:LEU23 4.4 25.0 1.0 C A:LEU22 4.5 25.0 1.0 O A:GLY41 4.5 25.0 1.0 H A:THR21 4.5 25.0 1.0 CA A:THR21 4.5 25.0 1.0 CA A:CA204 4.5 25.0 1.0 HB3 A:ASP43 4.5 25.0 1.0 N A:GLY40 4.6 25.0 1.0 O A:GLY42 4.6 25.0 1.0 CA A:GLY41 4.6 25.0 1.0 C A:GLY41 4.6 25.0 1.0 N A:GLY24 4.7 25.0 1.0 N A:GLY41 4.7 25.0 1.0 HA A:LEU22 4.7 25.0 1.0 N A:LEU22 4.7 25.0 1.0 HA A:GLU26 4.7 25.0 1.0 H A:GLY40 4.7 25.0 1.0 C A:TYR39 4.7 25.0 1.0 CA A:GLY40 4.8 25.0 1.0 HB2 A:LEU23 4.8 25.0 1.0 N A:TYR39 4.8 25.0 1.0 HA A:THR21 4.8 25.0 1.0 CB A:LEU23 4.8 25.0 1.0 CA A:GLY24 4.8 25.0 1.0 CG A:GLU26 4.8 25.0 1.0 CA A:LEU22 4.9 25.0 1.0 HA2 A:GLY20 4.9 25.0 1.0 CA A:ASP43 4.9 25.0 1.0 O A:LEU22 4.9 25.0 1.0 O A:TYR39 5.0 25.0 1.0

Calcium binding site 3 out of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:25.0 occ:1.00 OD1 A:ASP52 2.4 50.0 1.0 OD2 A:ASP34 2.4 50.0 1.0 O A:GLY47 2.4 25.0 1.0 O A:ALA49 2.4 25.0 1.0 O A:GLY30 2.5 25.0 1.0 O A:GLY32 2.5 25.0 1.0 O A:GLY31 2.9 25.0 1.0 CG A:ASP52 3.1 25.0 1.0 OD2 A:ASP52 3.2 50.0 1.0 H A:ASP34 3.3 25.0 1.0 CG A:ASP34 3.4 25.0 1.0 C A:GLY31 3.4 25.0 1.0 C A:GLY30 3.6 25.0 1.0 C A:ALA49 3.6 25.0 1.0 C A:GLY32 3.6 25.0 1.0 C A:GLY47 3.7 25.0 1.0 O A:GLY29 3.7 25.0 1.0 HB2 A:ASP34 3.9 25.0 1.0 C A:GLY48 3.9 25.0 1.0 HA3 A:GLY48 4.0 25.0 1.0 N A:ALA49 4.0 25.0 1.0 HA2 A:GLY31 4.1 25.0 1.0 N A:GLY32 4.1 25.0 1.0 O A:GLY48 4.1 25.0 1.0 OD1 A:ASP34 4.1 50.0 1.0 CA A:GLY31 4.1 25.0 1.0 CB A:ASP34 4.2 25.0 1.0 HA3 A:GLY50 4.2 25.0 1.0 N A:GLY31 4.2 25.0 1.0 N A:ASP34 4.3 25.0 1.0 CA A:GLY48 4.3 25.0 1.0 H A:ALA49 4.3 25.0 1.0 CA A:GLY32 4.3 25.0 1.0 HA A:ALA33 4.4 25.0 1.0 CA A:ALA49 4.4 25.0 1.0 N A:GLY48 4.4 25.0 1.0 CA A:CA201 4.4 25.0 1.0 CB A:ASP52 4.5 25.0 1.0 HA2 A:GLY30 4.6 25.0 1.0 HA2 A:GLY47 4.6 25.0 1.0 CA A:GLY30 4.6 25.0 1.0 HB3 A:ASP52 4.6 25.0 1.0 N A:GLY50 4.6 25.0 1.0 N A:ALA33 4.7 25.0 1.0 HB2 A:ALA49 4.7 25.0 1.0 HA3 A:GLY32 4.7 25.0 1.0 CA A:GLY47 4.7 25.0 1.0 C A:GLY29 4.7 25.0 1.0 H A:GLY32 4.8 25.0 1.0 CA A:GLY50 4.9 25.0 1.0 HA3 A:GLY47 4.9 25.0 1.0 CA A:ASP34 4.9 25.0 1.0 CA A:ALA33 4.9 25.0 1.0

Calcium binding site 4 out of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca204 b:25.0 occ:1.00 O A:GLU58 2.4 25.0 1.0 OD2 A:ASP43 2.4 50.0 1.0 O A:GLY41 2.4 25.0 1.0 OD1 A:ASP61 2.4 50.0 1.0 O A:GLY56 2.5 25.0 1.0 O A:TYR39 2.5 25.0 1.0 OD2 A:ASP61 3.0 50.0 1.0 CG A:ASP43 3.0 25.0 1.0 CG A:ASP61 3.0 25.0 1.0 OD1 A:ASP43 3.3 50.0 1.0 O A:GLY40 3.4 25.0 1.0 C A:TYR39 3.5 25.0 1.0 C A:GLU58 3.6 25.0 1.0 C A:GLY41 3.6 25.0 1.0 C A:GLY40 3.7 25.0 1.0 C A:GLY56 3.7 25.0 1.0 HB2 A:ASP43 3.8 25.0 1.0 O A:GLY38 3.8 25.0 1.0 HA3 A:GLY59 4.0 25.0 1.0 CB A:ASP43 4.0 25.0 1.0 HA2 A:GLY40 4.1 25.0 1.0 N A:GLY41 4.1 25.0 1.0 HA2 A:GLY56 4.2 25.0 1.0 N A:GLU58 4.2 25.0 1.0 CA A:GLY40 4.2 25.0 1.0 HA2 A:GLY42 4.2 25.0 1.0 N A:GLY40 4.2 25.0 1.0 H A:GLU58 4.3 25.0 1.0 HB3 A:GLU58 4.3 25.0 1.0 C A:GLY38 4.3 25.0 1.0 H A:ASP43 4.3 25.0 1.0 C A:GLY57 4.4 25.0 1.0 CA A:TYR39 4.4 25.0 1.0 CA A:GLU58 4.4 25.0 1.0 CA A:GLY41 4.5 25.0 1.0 CA A:GLY56 4.5 25.0 1.0 CB A:ASP61 4.5 25.0 1.0 N A:ASP43 4.5 25.0 1.0 HA A:TYR39 4.5 25.0 1.0 CA A:CA202 4.5 25.0 1.0 N A:GLY59 4.6 25.0 1.0 N A:TYR39 4.6 25.0 1.0 N A:GLY42 4.6 25.0 1.0 HA3 A:GLY56 4.6 25.0 1.0 H A:GLY41 4.7 25.0 1.0 CA A:GLY59 4.7 25.0 1.0 N A:GLY57 4.7 25.0 1.0 HA3 A:GLY57 4.7 25.0 1.0 C A:GLY42 4.7 25.0 1.0 HB3 A:ASP61 4.7 25.0 1.0 O A:GLY57 4.7 25.0 1.0 CA A:GLY42 4.7 25.0 1.0 HB3 A:ASP43 4.8 25.0 1.0 CA A:CA206 4.8 25.0 1.0 CA A:GLY57 4.8 25.0 1.0 HA3 A:GLY38 4.9 25.0 1.0 HA3 A:GLY41 4.9 25.0 1.0 CA A:ASP43 4.9 25.0 1.0 CB A:GLU58 4.9 25.0 1.0 O A:GLY59 5.0 25.0 1.0

Calcium binding site 5 out of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca205 b:25.0 occ:1.00 O A:GLY48 2.4 25.0 1.0 OD2 A:ASP81 2.4 50.0 1.0 O A:GLY50 2.5 25.0 1.0 OD2 A:ASP52 2.5 50.0 1.0 OD1 A:ASP81 2.6 50.0 1.0 O A:ASP70 2.6 25.0 1.0 CG A:ASP81 2.8 25.0 1.0 O A:SER80 3.4 25.0 1.0 C A:GLY50 3.6 25.0 1.0 H A:ASP52 3.6 25.0 1.0 C A:GLY48 3.7 25.0 1.0 CG A:ASP52 3.7 25.0 1.0 HB2 A:ASP52 3.8 25.0 1.0 C A:SER80 3.8 25.0 1.0 HA A:SER71 3.8 25.0 1.0 HD13 A:LEU67 3.8 25.0 1.0 C A:ASP70 3.8 25.0 1.0 HB3 A:ASP70 3.8 25.0 1.0 HA A:ARG51 3.9 25.0 1.0 C A:ALA49 4.0 25.0 1.0 HA A:ASP81 4.0 25.0 1.0 HD11 A:LEU67 4.1 25.0 1.0 N A:GLY50 4.1 25.0 1.0 HA A:ALA49 4.1 25.0 1.0 CB A:ASP81 4.2 25.0 1.0 N A:ASP81 4.2 25.0 1.0 O A:ALA49 4.2 25.0 1.0 HA A:SER80 4.3 25.0 1.0 CB A:ASP52 4.3 25.0 1.0 H A:GLY50 4.3 25.0 1.0 N A:ASP52 4.4 25.0 1.0 CA A:ASP81 4.4 25.0 1.0 HB2 A:SER71 4.4 25.0 1.0 CA A:ALA49 4.4 25.0 1.0 CA A:GLY50 4.4 25.0 1.0 CA A:SER80 4.4 25.0 1.0 N A:ALA49 4.4 25.0 1.0 CD1 A:LEU67 4.4 25.0 1.0 O A:PHE79 4.4 25.0 1.0 N A:ARG51 4.5 25.0 1.0 N A:SER80 4.6 25.0 1.0 CA A:SER71 4.6 25.0 1.0 N A:SER71 4.6 25.0 1.0 C A:PHE79 4.6 25.0 1.0 HB2 A:LEU67 4.6 25.0 1.0 CA A:ARG51 4.7 25.0 1.0 OD1 A:ASP52 4.7 50.0 1.0 O A:GLY47 4.7 25.0 1.0 C A:GLY47 4.7 25.0 1.0 N A:GLY48 4.8 25.0 1.0 HA3 A:GLY47 4.8 25.0 1.0 HB2 A:ASP81 4.8 25.0 1.0 CB A:ASP70 4.8 25.0 1.0 CA A:GLY48 4.8 25.0 1.0 CA A:ASP70 4.8 25.0 1.0 HB3 A:ASP81 4.8 25.0 1.0 HB3 A:PHE79 4.8 25.0 1.0 H A:ASP81 4.8 25.0 1.0 CB A:SER71 4.9 25.0 1.0 HA A:ASP70 4.9 25.0 1.0 HA3 A:GLY50 5.0 25.0 1.0 OG A:SER71 5.0 25.0 1.0 C A:ARG51 5.0 25.0 1.0 HD12 A:LEU67 5.0 25.0 1.0

Calcium binding site 6 out of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca206 b:25.0 occ:1.00 OD2 A:ASP61 2.4 50.0 1.0 OD2 A:ASP91 2.4 50.0 1.0 O A:GLY57 2.4 25.0 1.0 OD1 A:ASP91 2.5 50.0 1.0 O A:GLY59 2.5 25.0 1.0 CG A:ASP91 2.8 25.0 1.0 H A:ASP61 3.1 25.0 1.0 CG A:ASP61 3.4 25.0 1.0 HA A:PHE86 3.4 25.0 1.0 HB2 A:ASP61 3.4 25.0 1.0 C A:GLY57 3.5 25.0 1.0 C A:GLY59 3.7 25.0 1.0 O A:GLU58 3.7 25.0 1.0 HD3 A:PRO88 3.7 25.0 1.0 CD1 A:PHE86 3.9 25.0 1.0 CE1 A:PHE86 3.9 25.0 1.0 C A:GLU58 3.9 25.0 1.0 CB A:ASP61 3.9 25.0 1.0 HD1 A:PHE86 3.9 25.0 1.0 HG3 A:PRO88 3.9 25.0 1.0 HE1 A:PHE86 4.0 25.0 1.0 O A:GLY56 4.0 25.0 1.0 N A:ASP61 4.1 25.0 1.0 C A:GLY56 4.1 25.0 1.0 HA3 A:GLY56 4.2 25.0 1.0 N A:GLY59 4.2 25.0 1.0 OD1 A:ASP61 4.3 50.0 1.0 O A:ASP85 4.3 25.0 1.0 N A:GLY57 4.3 25.0 1.0 CB A:ASP91 4.3 25.0 1.0 HA A:ALA60 4.3 25.0 1.0 N A:GLU58 4.4 25.0 1.0 CG A:PHE86 4.4 25.0 1.0 CA A:GLY57 4.4 25.0 1.0 CA A:GLY59 4.5 25.0 1.0 CA A:PHE86 4.5 25.0 1.0 CZ A:PHE86 4.5 25.0 1.0 CD A:PRO88 4.6 25.0 1.0 CA A:GLU58 4.6 25.0 1.0 HA A:ASP91 4.6 25.0 1.0 HA A:GLU58 4.6 25.0 1.0 CA A:ASP61 4.7 25.0 1.0 N A:ALA60 4.7 25.0 1.0 HB2 A:ASP91 4.7 25.0 1.0 CG A:PRO88 4.7 25.0 1.0 CA A:GLY56 4.8 25.0 1.0 H A:GLY57 4.8 25.0 1.0 H A:GLY59 4.8 25.0 1.0 CA A:CA204 4.8 25.0 1.0 HA3 A:GLY59 4.8 25.0 1.0 HD2 A:PRO88 4.8 25.0 1.0 HB3 A:ASP61 4.8 25.0 1.0 HB3 A:ASP91 4.9 25.0 1.0 CD2 A:PHE86 4.9 25.0 1.0 CA A:ALA60 4.9 25.0 1.0 HA2 A:GLY57 4.9 25.0 1.0 HZ A:PHE86 4.9 25.0 1.0 CE2 A:PHE86 5.0 25.0 1.0 C A:PHE86 5.0 25.0 1.0

E.Buchinger, R.Wimmer, F.L.Aachmann. Structural and Functional Characterization of the R-Modules in Alginate C-5 Epimerases ALGE4 and ALGE6 From Azotobacter Vinelandii To Be Published.