Calcium in PDB 2ml2: Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
(pdb code 2ml2). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase, PDB code: 2ml2:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 2ml2
Go back to
Calcium Binding Sites List in 2ml2
Calcium binding site 1 out
of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:25.0
occ:1.00
|
OD1
|
A:ASP34
|
2.4
|
50.0
|
1.0
|
|
OD2
|
A:ASP16
|
2.4
|
50.0
|
1.0
|
|
O
|
A:SER12
|
2.4
|
25.0
|
1.0
|
|
O
|
A:GLY31
|
2.5
|
25.0
|
1.0
|
|
O
|
A:LEU14
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY29
|
2.5
|
25.0
|
1.0
|
|
OD2
|
A:ASP34
|
3.0
|
50.0
|
1.0
|
|
CG
|
A:ASP34
|
3.0
|
25.0
|
1.0
|
|
CG
|
A:ASP16
|
3.2
|
25.0
|
1.0
|
|
H
|
A:ASP16
|
3.2
|
25.0
|
1.0
|
|
HA3
|
A:GLY29
|
3.3
|
25.0
|
1.0
|
|
C
|
A:GLY29
|
3.4
|
25.0
|
1.0
|
|
HA
|
A:ASP13
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLY31
|
3.5
|
25.0
|
1.0
|
|
C
|
A:SER12
|
3.6
|
25.0
|
1.0
|
|
HB2
|
A:ASP16
|
3.6
|
25.0
|
1.0
|
|
C
|
A:LEU14
|
3.7
|
25.0
|
1.0
|
|
H
|
A:SER12
|
3.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY32
|
3.8
|
25.0
|
1.0
|
|
CA
|
A:GLY29
|
3.9
|
25.0
|
1.0
|
|
OD1
|
A:ASP16
|
3.9
|
50.0
|
1.0
|
|
CB
|
A:ASP16
|
3.9
|
25.0
|
1.0
|
|
N
|
A:ASP16
|
4.0
|
25.0
|
1.0
|
|
C
|
A:ASP13
|
4.1
|
25.0
|
1.0
|
|
CA
|
A:ASP13
|
4.1
|
25.0
|
1.0
|
|
N
|
A:LEU14
|
4.1
|
25.0
|
1.0
|
|
H
|
A:LEU14
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLY31
|
4.2
|
25.0
|
1.0
|
|
HA
|
A:ASP15
|
4.3
|
25.0
|
1.0
|
|
N
|
A:ASP13
|
4.3
|
25.0
|
1.0
|
|
C
|
A:GLY30
|
4.3
|
25.0
|
1.0
|
|
HA2
|
A:GLY29
|
4.4
|
25.0
|
1.0
|
|
N
|
A:GLY30
|
4.4
|
25.0
|
1.0
|
|
H
|
A:GLY31
|
4.4
|
25.0
|
1.0
|
|
N
|
A:GLY32
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY31
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:CA203
|
4.4
|
25.0
|
1.0
|
|
CB
|
A:ASP34
|
4.4
|
25.0
|
1.0
|
|
O
|
A:ASP13
|
4.5
|
25.0
|
1.0
|
|
N
|
A:SER12
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY32
|
4.5
|
25.0
|
1.0
|
|
O
|
A:GLY30
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:ASP16
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:SER12
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:LEU14
|
4.6
|
25.0
|
1.0
|
|
HB3
|
A:SER12
|
4.7
|
25.0
|
1.0
|
|
N
|
A:ASP15
|
4.7
|
25.0
|
1.0
|
|
HB3
|
A:ASP34
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ASP15
|
4.8
|
25.0
|
1.0
|
|
C
|
A:ASP15
|
4.8
|
25.0
|
1.0
|
|
O
|
A:GLY32
|
4.8
|
25.0
|
1.0
|
|
C
|
A:GLY32
|
4.9
|
25.0
|
1.0
|
|
HB3
|
A:ASP16
|
4.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY31
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:GLY30
|
4.9
|
25.0
|
1.0
|
|
HA
|
A:ASP34
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 2 out
of 6 in 2ml2
Go back to
Calcium Binding Sites List in 2ml2
Calcium binding site 2 out
of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:25.0
occ:1.00
|
OD1
|
A:ASP43
|
2.4
|
50.0
|
1.0
|
|
O
|
A:LEU23
|
2.4
|
25.0
|
1.0
|
|
OE1
|
A:GLU26
|
2.4
|
75.0
|
1.0
|
|
O
|
A:THR21
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY38
|
2.6
|
25.0
|
1.0
|
|
O
|
A:GLY40
|
2.6
|
25.0
|
1.0
|
|
CG
|
A:ASP43
|
3.0
|
25.0
|
1.0
|
|
OD2
|
A:ASP43
|
3.2
|
50.0
|
1.0
|
|
O
|
A:GLU25
|
3.2
|
25.0
|
1.0
|
|
H
|
A:GLU25
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLY38
|
3.6
|
25.0
|
1.0
|
|
HA3
|
A:GLY20
|
3.6
|
25.0
|
1.0
|
|
HA2
|
A:GLY38
|
3.7
|
25.0
|
1.0
|
|
C
|
A:LEU23
|
3.7
|
25.0
|
1.0
|
|
CD
|
A:GLU26
|
3.7
|
25.0
|
1.0
|
|
C
|
A:THR21
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY40
|
3.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY38
|
3.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY41
|
3.9
|
25.0
|
1.0
|
|
CA
|
A:GLY38
|
4.0
|
25.0
|
1.0
|
|
C
|
A:GLY20
|
4.0
|
25.0
|
1.0
|
|
O
|
A:GLY20
|
4.1
|
25.0
|
1.0
|
|
HA2
|
A:GLY24
|
4.2
|
25.0
|
1.0
|
|
N
|
A:THR21
|
4.2
|
25.0
|
1.0
|
|
N
|
A:LEU23
|
4.2
|
25.0
|
1.0
|
|
H
|
A:LEU23
|
4.2
|
25.0
|
1.0
|
|
OE2
|
A:GLU26
|
4.3
|
75.0
|
1.0
|
|
C
|
A:GLU25
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLU25
|
4.3
|
25.0
|
1.0
|
|
CA
|
A:GLY20
|
4.3
|
25.0
|
1.0
|
|
CB
|
A:ASP43
|
4.4
|
25.0
|
1.0
|
|
HB3
|
A:LEU23
|
4.4
|
25.0
|
1.0
|
|
HA
|
A:ASP43
|
4.4
|
25.0
|
1.0
|
|
HB2
|
A:GLU26
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:LEU23
|
4.4
|
25.0
|
1.0
|
|
C
|
A:LEU22
|
4.5
|
25.0
|
1.0
|
|
O
|
A:GLY41
|
4.5
|
25.0
|
1.0
|
|
H
|
A:THR21
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:THR21
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:CA204
|
4.5
|
25.0
|
1.0
|
|
HB3
|
A:ASP43
|
4.5
|
25.0
|
1.0
|
|
N
|
A:GLY40
|
4.6
|
25.0
|
1.0
|
|
O
|
A:GLY42
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY41
|
4.6
|
25.0
|
1.0
|
|
C
|
A:GLY41
|
4.6
|
25.0
|
1.0
|
|
N
|
A:GLY24
|
4.7
|
25.0
|
1.0
|
|
N
|
A:GLY41
|
4.7
|
25.0
|
1.0
|
|
HA
|
A:LEU22
|
4.7
|
25.0
|
1.0
|
|
N
|
A:LEU22
|
4.7
|
25.0
|
1.0
|
|
HA
|
A:GLU26
|
4.7
|
25.0
|
1.0
|
|
H
|
A:GLY40
|
4.7
|
25.0
|
1.0
|
|
C
|
A:TYR39
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:GLY40
|
4.8
|
25.0
|
1.0
|
|
HB2
|
A:LEU23
|
4.8
|
25.0
|
1.0
|
|
N
|
A:TYR39
|
4.8
|
25.0
|
1.0
|
|
HA
|
A:THR21
|
4.8
|
25.0
|
1.0
|
|
CB
|
A:LEU23
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:GLY24
|
4.8
|
25.0
|
1.0
|
|
CG
|
A:GLU26
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:LEU22
|
4.9
|
25.0
|
1.0
|
|
HA2
|
A:GLY20
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ASP43
|
4.9
|
25.0
|
1.0
|
|
O
|
A:LEU22
|
4.9
|
25.0
|
1.0
|
|
O
|
A:TYR39
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 3 out
of 6 in 2ml2
Go back to
Calcium Binding Sites List in 2ml2
Calcium binding site 3 out
of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:25.0
occ:1.00
|
OD1
|
A:ASP52
|
2.4
|
50.0
|
1.0
|
|
OD2
|
A:ASP34
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY47
|
2.4
|
25.0
|
1.0
|
|
O
|
A:ALA49
|
2.4
|
25.0
|
1.0
|
|
O
|
A:GLY30
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY32
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY31
|
2.9
|
25.0
|
1.0
|
|
CG
|
A:ASP52
|
3.1
|
25.0
|
1.0
|
|
OD2
|
A:ASP52
|
3.2
|
50.0
|
1.0
|
|
H
|
A:ASP34
|
3.3
|
25.0
|
1.0
|
|
CG
|
A:ASP34
|
3.4
|
25.0
|
1.0
|
|
C
|
A:GLY31
|
3.4
|
25.0
|
1.0
|
|
C
|
A:GLY30
|
3.6
|
25.0
|
1.0
|
|
C
|
A:ALA49
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY32
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY47
|
3.7
|
25.0
|
1.0
|
|
O
|
A:GLY29
|
3.7
|
25.0
|
1.0
|
|
HB2
|
A:ASP34
|
3.9
|
25.0
|
1.0
|
|
C
|
A:GLY48
|
3.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY48
|
4.0
|
25.0
|
1.0
|
|
N
|
A:ALA49
|
4.0
|
25.0
|
1.0
|
|
HA2
|
A:GLY31
|
4.1
|
25.0
|
1.0
|
|
N
|
A:GLY32
|
4.1
|
25.0
|
1.0
|
|
O
|
A:GLY48
|
4.1
|
25.0
|
1.0
|
|
OD1
|
A:ASP34
|
4.1
|
50.0
|
1.0
|
|
CA
|
A:GLY31
|
4.1
|
25.0
|
1.0
|
|
CB
|
A:ASP34
|
4.2
|
25.0
|
1.0
|
|
HA3
|
A:GLY50
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLY31
|
4.2
|
25.0
|
1.0
|
|
N
|
A:ASP34
|
4.3
|
25.0
|
1.0
|
|
CA
|
A:GLY48
|
4.3
|
25.0
|
1.0
|
|
H
|
A:ALA49
|
4.3
|
25.0
|
1.0
|
|
CA
|
A:GLY32
|
4.3
|
25.0
|
1.0
|
|
HA
|
A:ALA33
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:ALA49
|
4.4
|
25.0
|
1.0
|
|
N
|
A:GLY48
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:CA201
|
4.4
|
25.0
|
1.0
|
|
CB
|
A:ASP52
|
4.5
|
25.0
|
1.0
|
|
HA2
|
A:GLY30
|
4.6
|
25.0
|
1.0
|
|
HA2
|
A:GLY47
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY30
|
4.6
|
25.0
|
1.0
|
|
HB3
|
A:ASP52
|
4.6
|
25.0
|
1.0
|
|
N
|
A:GLY50
|
4.6
|
25.0
|
1.0
|
|
N
|
A:ALA33
|
4.7
|
25.0
|
1.0
|
|
HB2
|
A:ALA49
|
4.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY32
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:GLY47
|
4.7
|
25.0
|
1.0
|
|
C
|
A:GLY29
|
4.7
|
25.0
|
1.0
|
|
H
|
A:GLY32
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:GLY50
|
4.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY47
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ASP34
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ALA33
|
4.9
|
25.0
|
1.0
|
|
Calcium binding site 4 out
of 6 in 2ml2
Go back to
Calcium Binding Sites List in 2ml2
Calcium binding site 4 out
of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:25.0
occ:1.00
|
O
|
A:GLU58
|
2.4
|
25.0
|
1.0
|
|
OD2
|
A:ASP43
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY41
|
2.4
|
25.0
|
1.0
|
|
OD1
|
A:ASP61
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY56
|
2.5
|
25.0
|
1.0
|
|
O
|
A:TYR39
|
2.5
|
25.0
|
1.0
|
|
OD2
|
A:ASP61
|
3.0
|
50.0
|
1.0
|
|
CG
|
A:ASP43
|
3.0
|
25.0
|
1.0
|
|
CG
|
A:ASP61
|
3.0
|
25.0
|
1.0
|
|
OD1
|
A:ASP43
|
3.3
|
50.0
|
1.0
|
|
O
|
A:GLY40
|
3.4
|
25.0
|
1.0
|
|
C
|
A:TYR39
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLU58
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY41
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY40
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY56
|
3.7
|
25.0
|
1.0
|
|
HB2
|
A:ASP43
|
3.8
|
25.0
|
1.0
|
|
O
|
A:GLY38
|
3.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY59
|
4.0
|
25.0
|
1.0
|
|
CB
|
A:ASP43
|
4.0
|
25.0
|
1.0
|
|
HA2
|
A:GLY40
|
4.1
|
25.0
|
1.0
|
|
N
|
A:GLY41
|
4.1
|
25.0
|
1.0
|
|
HA2
|
A:GLY56
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLU58
|
4.2
|
25.0
|
1.0
|
|
CA
|
A:GLY40
|
4.2
|
25.0
|
1.0
|
|
HA2
|
A:GLY42
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLY40
|
4.2
|
25.0
|
1.0
|
|
H
|
A:GLU58
|
4.3
|
25.0
|
1.0
|
|
HB3
|
A:GLU58
|
4.3
|
25.0
|
1.0
|
|
C
|
A:GLY38
|
4.3
|
25.0
|
1.0
|
|
H
|
A:ASP43
|
4.3
|
25.0
|
1.0
|
|
C
|
A:GLY57
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:TYR39
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLU58
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY41
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY56
|
4.5
|
25.0
|
1.0
|
|
CB
|
A:ASP61
|
4.5
|
25.0
|
1.0
|
|
N
|
A:ASP43
|
4.5
|
25.0
|
1.0
|
|
HA
|
A:TYR39
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:CA202
|
4.5
|
25.0
|
1.0
|
|
N
|
A:GLY59
|
4.6
|
25.0
|
1.0
|
|
N
|
A:TYR39
|
4.6
|
25.0
|
1.0
|
|
N
|
A:GLY42
|
4.6
|
25.0
|
1.0
|
|
HA3
|
A:GLY56
|
4.6
|
25.0
|
1.0
|
|
H
|
A:GLY41
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:GLY59
|
4.7
|
25.0
|
1.0
|
|
N
|
A:GLY57
|
4.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY57
|
4.7
|
25.0
|
1.0
|
|
C
|
A:GLY42
|
4.7
|
25.0
|
1.0
|
|
HB3
|
A:ASP61
|
4.7
|
25.0
|
1.0
|
|
O
|
A:GLY57
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:GLY42
|
4.7
|
25.0
|
1.0
|
|
HB3
|
A:ASP43
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:CA206
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:GLY57
|
4.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY38
|
4.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY41
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ASP43
|
4.9
|
25.0
|
1.0
|
|
CB
|
A:GLU58
|
4.9
|
25.0
|
1.0
|
|
O
|
A:GLY59
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 5 out
of 6 in 2ml2
Go back to
Calcium Binding Sites List in 2ml2
Calcium binding site 5 out
of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:25.0
occ:1.00
|
O
|
A:GLY48
|
2.4
|
25.0
|
1.0
|
|
OD2
|
A:ASP81
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY50
|
2.5
|
25.0
|
1.0
|
|
OD2
|
A:ASP52
|
2.5
|
50.0
|
1.0
|
|
OD1
|
A:ASP81
|
2.6
|
50.0
|
1.0
|
|
O
|
A:ASP70
|
2.6
|
25.0
|
1.0
|
|
CG
|
A:ASP81
|
2.8
|
25.0
|
1.0
|
|
O
|
A:SER80
|
3.4
|
25.0
|
1.0
|
|
C
|
A:GLY50
|
3.6
|
25.0
|
1.0
|
|
H
|
A:ASP52
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY48
|
3.7
|
25.0
|
1.0
|
|
CG
|
A:ASP52
|
3.7
|
25.0
|
1.0
|
|
HB2
|
A:ASP52
|
3.8
|
25.0
|
1.0
|
|
C
|
A:SER80
|
3.8
|
25.0
|
1.0
|
|
HA
|
A:SER71
|
3.8
|
25.0
|
1.0
|
|
HD13
|
A:LEU67
|
3.8
|
25.0
|
1.0
|
|
C
|
A:ASP70
|
3.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP70
|
3.8
|
25.0
|
1.0
|
|
HA
|
A:ARG51
|
3.9
|
25.0
|
1.0
|
|
C
|
A:ALA49
|
4.0
|
25.0
|
1.0
|
|
HA
|
A:ASP81
|
4.0
|
25.0
|
1.0
|
|
HD11
|
A:LEU67
|
4.1
|
25.0
|
1.0
|
|
N
|
A:GLY50
|
4.1
|
25.0
|
1.0
|
|
HA
|
A:ALA49
|
4.1
|
25.0
|
1.0
|
|
CB
|
A:ASP81
|
4.2
|
25.0
|
1.0
|
|
N
|
A:ASP81
|
4.2
|
25.0
|
1.0
|
|
O
|
A:ALA49
|
4.2
|
25.0
|
1.0
|
|
HA
|
A:SER80
|
4.3
|
25.0
|
1.0
|
|
CB
|
A:ASP52
|
4.3
|
25.0
|
1.0
|
|
H
|
A:GLY50
|
4.3
|
25.0
|
1.0
|
|
N
|
A:ASP52
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:ASP81
|
4.4
|
25.0
|
1.0
|
|
HB2
|
A:SER71
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:ALA49
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY50
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:SER80
|
4.4
|
25.0
|
1.0
|
|
N
|
A:ALA49
|
4.4
|
25.0
|
1.0
|
|
CD1
|
A:LEU67
|
4.4
|
25.0
|
1.0
|
|
O
|
A:PHE79
|
4.4
|
25.0
|
1.0
|
|
N
|
A:ARG51
|
4.5
|
25.0
|
1.0
|
|
N
|
A:SER80
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:SER71
|
4.6
|
25.0
|
1.0
|
|
N
|
A:SER71
|
4.6
|
25.0
|
1.0
|
|
C
|
A:PHE79
|
4.6
|
25.0
|
1.0
|
|
HB2
|
A:LEU67
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:ARG51
|
4.7
|
25.0
|
1.0
|
|
OD1
|
A:ASP52
|
4.7
|
50.0
|
1.0
|
|
O
|
A:GLY47
|
4.7
|
25.0
|
1.0
|
|
C
|
A:GLY47
|
4.7
|
25.0
|
1.0
|
|
N
|
A:GLY48
|
4.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY47
|
4.8
|
25.0
|
1.0
|
|
HB2
|
A:ASP81
|
4.8
|
25.0
|
1.0
|
|
CB
|
A:ASP70
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:GLY48
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:ASP70
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP81
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:PHE79
|
4.8
|
25.0
|
1.0
|
|
H
|
A:ASP81
|
4.8
|
25.0
|
1.0
|
|
CB
|
A:SER71
|
4.9
|
25.0
|
1.0
|
|
HA
|
A:ASP70
|
4.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY50
|
5.0
|
25.0
|
1.0
|
|
OG
|
A:SER71
|
5.0
|
25.0
|
1.0
|
|
C
|
A:ARG51
|
5.0
|
25.0
|
1.0
|
|
HD12
|
A:LEU67
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 6 out
of 6 in 2ml2
Go back to
Calcium Binding Sites List in 2ml2
Calcium binding site 6 out
of 6 in the Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Solution Structure of ALGE6R2 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca206
b:25.0
occ:1.00
|
OD2
|
A:ASP61
|
2.4
|
50.0
|
1.0
|
|
OD2
|
A:ASP91
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY57
|
2.4
|
25.0
|
1.0
|
|
OD1
|
A:ASP91
|
2.5
|
50.0
|
1.0
|
|
O
|
A:GLY59
|
2.5
|
25.0
|
1.0
|
|
CG
|
A:ASP91
|
2.8
|
25.0
|
1.0
|
|
H
|
A:ASP61
|
3.1
|
25.0
|
1.0
|
|
CG
|
A:ASP61
|
3.4
|
25.0
|
1.0
|
|
HA
|
A:PHE86
|
3.4
|
25.0
|
1.0
|
|
HB2
|
A:ASP61
|
3.4
|
25.0
|
1.0
|
|
C
|
A:GLY57
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLY59
|
3.7
|
25.0
|
1.0
|
|
O
|
A:GLU58
|
3.7
|
25.0
|
1.0
|
|
HD3
|
A:PRO88
|
3.7
|
25.0
|
1.0
|
|
CD1
|
A:PHE86
|
3.9
|
25.0
|
1.0
|
|
CE1
|
A:PHE86
|
3.9
|
25.0
|
1.0
|
|
C
|
A:GLU58
|
3.9
|
25.0
|
1.0
|
|
CB
|
A:ASP61
|
3.9
|
25.0
|
1.0
|
|
HD1
|
A:PHE86
|
3.9
|
25.0
|
1.0
|
|
HG3
|
A:PRO88
|
3.9
|
25.0
|
1.0
|
|
HE1
|
A:PHE86
|
4.0
|
25.0
|
1.0
|
|
O
|
A:GLY56
|
4.0
|
25.0
|
1.0
|
|
N
|
A:ASP61
|
4.1
|
25.0
|
1.0
|
|
C
|
A:GLY56
|
4.1
|
25.0
|
1.0
|
|
HA3
|
A:GLY56
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLY59
|
4.2
|
25.0
|
1.0
|
|
OD1
|
A:ASP61
|
4.3
|
50.0
|
1.0
|
|
O
|
A:ASP85
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLY57
|
4.3
|
25.0
|
1.0
|
|
CB
|
A:ASP91
|
4.3
|
25.0
|
1.0
|
|
HA
|
A:ALA60
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLU58
|
4.4
|
25.0
|
1.0
|
|
CG
|
A:PHE86
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY57
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY59
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:PHE86
|
4.5
|
25.0
|
1.0
|
|
CZ
|
A:PHE86
|
4.5
|
25.0
|
1.0
|
|
CD
|
A:PRO88
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLU58
|
4.6
|
25.0
|
1.0
|
|
HA
|
A:ASP91
|
4.6
|
25.0
|
1.0
|
|
HA
|
A:GLU58
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:ASP61
|
4.7
|
25.0
|
1.0
|
|
N
|
A:ALA60
|
4.7
|
25.0
|
1.0
|
|
HB2
|
A:ASP91
|
4.7
|
25.0
|
1.0
|
|
CG
|
A:PRO88
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:GLY56
|
4.8
|
25.0
|
1.0
|
|
H
|
A:GLY57
|
4.8
|
25.0
|
1.0
|
|
H
|
A:GLY59
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:CA204
|
4.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY59
|
4.8
|
25.0
|
1.0
|
|
HD2
|
A:PRO88
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP61
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP91
|
4.9
|
25.0
|
1.0
|
|
CD2
|
A:PHE86
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ALA60
|
4.9
|
25.0
|
1.0
|
|
HA2
|
A:GLY57
|
4.9
|
25.0
|
1.0
|
|
HZ
|
A:PHE86
|
4.9
|
25.0
|
1.0
|
|
CE2
|
A:PHE86
|
5.0
|
25.0
|
1.0
|
|
C
|
A:PHE86
|
5.0
|
25.0
|
1.0
|
|
Reference:
E.Buchinger,
R.Wimmer,
F.L.Aachmann.
Structural and Functional Characterization of the R-Modules in Alginate C-5 Epimerases ALGE4 and ALGE6 From Azotobacter Vinelandii To Be Published.
Page generated: Fri Jul 12 14:18:29 2024
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