Calcium in PDB 2ml3: Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
(pdb code 2ml3). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase, PDB code: 2ml3:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 2ml3
Go back to
Calcium Binding Sites List in 2ml3
Calcium binding site 1 out
of 6 in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:25.0
occ:1.00
|
OD2
|
A:ASP17
|
2.4
|
50.0
|
1.0
|
|
O
|
A:LEU15
|
2.4
|
25.0
|
1.0
|
|
OD1
|
A:ASP35
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY30
|
2.4
|
25.0
|
1.0
|
|
O
|
A:GLY32
|
2.6
|
25.0
|
1.0
|
|
O
|
A:SER13
|
2.6
|
25.0
|
1.0
|
|
O
|
A:GLY12
|
2.7
|
25.0
|
1.0
|
|
H
|
A:LEU15
|
3.1
|
25.0
|
1.0
|
|
CG
|
A:ASP35
|
3.2
|
25.0
|
1.0
|
|
OD2
|
A:ASP35
|
3.3
|
50.0
|
1.0
|
|
HA
|
A:SER13
|
3.4
|
25.0
|
1.0
|
|
CG
|
A:ASP17
|
3.4
|
25.0
|
1.0
|
|
C
|
A:SER13
|
3.4
|
25.0
|
1.0
|
|
C
|
A:LEU15
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLY30
|
3.7
|
25.0
|
1.0
|
|
N
|
A:LEU15
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY12
|
3.8
|
25.0
|
1.0
|
|
C
|
A:GLY32
|
3.8
|
25.0
|
1.0
|
|
CA
|
A:SER13
|
3.8
|
25.0
|
1.0
|
|
OD1
|
A:ASP17
|
4.0
|
50.0
|
1.0
|
|
HB2
|
A:ASP17
|
4.1
|
25.0
|
1.0
|
|
HA3
|
A:GLY31
|
4.1
|
25.0
|
1.0
|
|
N
|
A:GLY32
|
4.2
|
25.0
|
1.0
|
|
HD13
|
A:LEU15
|
4.2
|
25.0
|
1.0
|
|
CA
|
A:LEU15
|
4.2
|
25.0
|
1.0
|
|
H
|
A:GLY32
|
4.2
|
25.0
|
1.0
|
|
HA
|
A:ASP16
|
4.2
|
25.0
|
1.0
|
|
H
|
A:ASP17
|
4.2
|
25.0
|
1.0
|
|
N
|
A:SER13
|
4.3
|
25.0
|
1.0
|
|
C
|
A:GLY31
|
4.3
|
25.0
|
1.0
|
|
CB
|
A:ASP17
|
4.3
|
25.0
|
1.0
|
|
HA3
|
A:GLY33
|
4.3
|
25.0
|
1.0
|
|
HA2
|
A:GLY30
|
4.3
|
25.0
|
1.0
|
|
N
|
A:ASP14
|
4.3
|
25.0
|
1.0
|
|
N
|
A:ASP16
|
4.5
|
25.0
|
1.0
|
|
N
|
A:ASP17
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY31
|
4.5
|
25.0
|
1.0
|
|
CB
|
A:ASP35
|
4.5
|
25.0
|
1.0
|
|
C
|
A:ASP14
|
4.6
|
25.0
|
1.0
|
|
N
|
A:GLY31
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY30
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY32
|
4.6
|
25.0
|
1.0
|
|
HB3
|
A:ASP35
|
4.6
|
25.0
|
1.0
|
|
O
|
A:GLY31
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ASP16
|
4.7
|
25.0
|
1.0
|
|
C
|
A:ASP16
|
4.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY12
|
4.8
|
25.0
|
1.0
|
|
N
|
A:GLY33
|
4.8
|
25.0
|
1.0
|
|
HA
|
A:LEU15
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:ASP14
|
4.8
|
25.0
|
1.0
|
|
HA
|
A:ASP14
|
4.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY30
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:GLY33
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:GLY12
|
4.9
|
25.0
|
1.0
|
|
O
|
A:GLY33
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 2 out
of 6 in 2ml3
Go back to
Calcium Binding Sites List in 2ml3
Calcium binding site 2 out
of 6 in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:25.0
occ:1.00
|
OE1
|
A:GLU26
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY24
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY39
|
2.5
|
25.0
|
1.0
|
|
O
|
A:ALA41
|
2.5
|
25.0
|
1.0
|
|
OD1
|
A:ASP44
|
2.5
|
50.0
|
1.0
|
|
O
|
A:THR22
|
2.6
|
25.0
|
1.0
|
|
OD2
|
A:ASP44
|
2.9
|
50.0
|
1.0
|
|
CG
|
A:ASP44
|
3.1
|
25.0
|
1.0
|
|
CD
|
A:GLU26
|
3.5
|
25.0
|
1.0
|
|
H
|
A:GLY24
|
3.5
|
25.0
|
1.0
|
|
HG3
|
A:GLU26
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY24
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY39
|
3.6
|
25.0
|
1.0
|
|
C
|
A:ALA41
|
3.7
|
25.0
|
1.0
|
|
C
|
A:THR22
|
3.7
|
25.0
|
1.0
|
|
HB2
|
A:GLU26
|
3.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY42
|
3.8
|
25.0
|
1.0
|
|
N
|
A:GLY24
|
3.9
|
25.0
|
1.0
|
|
CG
|
A:GLU26
|
4.0
|
25.0
|
1.0
|
|
HA2
|
A:GLY39
|
4.0
|
25.0
|
1.0
|
|
HA
|
A:LEU23
|
4.1
|
25.0
|
1.0
|
|
HB2
|
A:TYR40
|
4.2
|
25.0
|
1.0
|
|
HA
|
A:SER25
|
4.2
|
25.0
|
1.0
|
|
O
|
A:TYR40
|
4.2
|
25.0
|
1.0
|
|
OG1
|
A:THR22
|
4.2
|
25.0
|
1.0
|
|
C
|
A:TYR40
|
4.2
|
25.0
|
1.0
|
|
H
|
A:THR22
|
4.3
|
25.0
|
1.0
|
|
N
|
A:THR22
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY39
|
4.4
|
25.0
|
1.0
|
|
CB
|
A:GLU26
|
4.4
|
25.0
|
1.0
|
|
H
|
A:GLU26
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY24
|
4.4
|
25.0
|
1.0
|
|
N
|
A:ALA41
|
4.4
|
25.0
|
1.0
|
|
HA3
|
A:GLY21
|
4.5
|
25.0
|
1.0
|
|
C
|
A:LEU23
|
4.5
|
25.0
|
1.0
|
|
OE2
|
A:GLU26
|
4.5
|
50.0
|
1.0
|
|
CB
|
A:ASP44
|
4.5
|
25.0
|
1.0
|
|
N
|
A:GLY42
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY42
|
4.5
|
25.0
|
1.0
|
|
HA3
|
A:GLY39
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:THR22
|
4.6
|
25.0
|
1.0
|
|
N
|
A:GLU26
|
4.6
|
25.0
|
1.0
|
|
N
|
A:SER25
|
4.6
|
25.0
|
1.0
|
|
N
|
A:LEU23
|
4.6
|
25.0
|
1.0
|
|
N
|
A:TYR40
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:LEU23
|
4.6
|
25.0
|
1.0
|
|
O
|
A:GLY42
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ALA41
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:SER25
|
4.7
|
25.0
|
1.0
|
|
C
|
A:SER25
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP44
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:TYR40
|
4.8
|
25.0
|
1.0
|
|
C
|
A:GLY21
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:CA204
|
4.8
|
25.0
|
1.0
|
|
C
|
A:GLY42
|
4.8
|
25.0
|
1.0
|
|
H
|
A:ALA41
|
4.9
|
25.0
|
1.0
|
|
HG1
|
A:THR22
|
4.9
|
25.0
|
1.0
|
|
CB
|
A:TYR40
|
5.0
|
25.0
|
1.0
|
|
HA2
|
A:GLY24
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 3 out
of 6 in 2ml3
Go back to
Calcium Binding Sites List in 2ml3
Calcium binding site 3 out
of 6 in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:25.0
occ:1.00
|
OD1
|
A:ASP53
|
2.4
|
50.0
|
1.0
|
|
OD2
|
A:ASP35
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY31
|
2.4
|
25.0
|
1.0
|
|
O
|
A:GLY33
|
2.5
|
25.0
|
1.0
|
|
O
|
A:ALA50
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY48
|
2.6
|
25.0
|
1.0
|
|
OD2
|
A:ASP53
|
3.0
|
50.0
|
1.0
|
|
CG
|
A:ASP53
|
3.1
|
25.0
|
1.0
|
|
CG
|
A:ASP35
|
3.5
|
25.0
|
1.0
|
|
H
|
A:ASP35
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLY31
|
3.5
|
25.0
|
1.0
|
|
C
|
A:ALA50
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY33
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY48
|
3.7
|
25.0
|
1.0
|
|
O
|
A:GLY32
|
3.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY30
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY32
|
3.8
|
25.0
|
1.0
|
|
O
|
A:GLY49
|
3.8
|
25.0
|
1.0
|
|
C
|
A:GLY49
|
3.8
|
25.0
|
1.0
|
|
HB2
|
A:ASP35
|
3.9
|
25.0
|
1.0
|
|
HA2
|
A:GLY32
|
4.0
|
25.0
|
1.0
|
|
HA3
|
A:GLY49
|
4.0
|
25.0
|
1.0
|
|
N
|
A:GLY33
|
4.1
|
25.0
|
1.0
|
|
C
|
A:GLY30
|
4.1
|
25.0
|
1.0
|
|
HA3
|
A:GLY51
|
4.1
|
25.0
|
1.0
|
|
N
|
A:ALA50
|
4.1
|
25.0
|
1.0
|
|
HA
|
A:ALA34
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLY31
|
4.2
|
25.0
|
1.0
|
|
O
|
A:GLY30
|
4.2
|
25.0
|
1.0
|
|
CA
|
A:GLY32
|
4.2
|
25.0
|
1.0
|
|
CB
|
A:ASP35
|
4.3
|
25.0
|
1.0
|
|
OD1
|
A:ASP35
|
4.3
|
50.0
|
1.0
|
|
N
|
A:ASP35
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLY32
|
4.3
|
25.0
|
1.0
|
|
CA
|
A:GLY49
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLY49
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY33
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY30
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:ALA50
|
4.5
|
25.0
|
1.0
|
|
H
|
A:GLY31
|
4.5
|
25.0
|
1.0
|
|
H
|
A:GLY33
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY31
|
4.5
|
25.0
|
1.0
|
|
N
|
A:GLY51
|
4.5
|
25.0
|
1.0
|
|
H
|
A:ALA50
|
4.5
|
25.0
|
1.0
|
|
CB
|
A:ASP53
|
4.5
|
25.0
|
1.0
|
|
HA2
|
A:GLY48
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY48
|
4.6
|
25.0
|
1.0
|
|
N
|
A:ALA34
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY51
|
4.7
|
25.0
|
1.0
|
|
O
|
A:GLY51
|
4.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY48
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ALA34
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP53
|
4.8
|
25.0
|
1.0
|
|
C
|
A:GLY51
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:CA205
|
4.9
|
25.0
|
1.0
|
|
HB1
|
A:ALA50
|
4.9
|
25.0
|
1.0
|
|
HA3
|
A:GLY33
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ASP35
|
5.0
|
25.0
|
1.0
|
|
HA
|
A:ASP53
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 4 out
of 6 in 2ml3
Go back to
Calcium Binding Sites List in 2ml3
Calcium binding site 4 out
of 6 in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:25.0
occ:1.00
|
OD1
|
A:ASP62
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY42
|
2.4
|
25.0
|
1.0
|
|
O
|
A:GLU59
|
2.4
|
25.0
|
1.0
|
|
O
|
A:GLY57
|
2.4
|
25.0
|
1.0
|
|
OD2
|
A:ASP44
|
2.4
|
50.0
|
1.0
|
|
O
|
A:TYR40
|
2.5
|
25.0
|
1.0
|
|
CG
|
A:ASP62
|
3.2
|
25.0
|
1.0
|
|
OD2
|
A:ASP62
|
3.3
|
50.0
|
1.0
|
|
CG
|
A:ASP44
|
3.4
|
25.0
|
1.0
|
|
HB2
|
A:ASP44
|
3.4
|
25.0
|
1.0
|
|
H
|
A:ASP44
|
3.4
|
25.0
|
1.0
|
|
C
|
A:GLY57
|
3.5
|
25.0
|
1.0
|
|
C
|
A:GLU59
|
3.6
|
25.0
|
1.0
|
|
C
|
A:GLY42
|
3.6
|
25.0
|
1.0
|
|
C
|
A:TYR40
|
3.7
|
25.0
|
1.0
|
|
HA3
|
A:GLY60
|
3.8
|
25.0
|
1.0
|
|
O
|
A:GLY58
|
3.8
|
25.0
|
1.0
|
|
C
|
A:GLY58
|
3.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY58
|
3.8
|
25.0
|
1.0
|
|
C
|
A:ALA41
|
3.9
|
25.0
|
1.0
|
|
CB
|
A:ASP44
|
4.0
|
25.0
|
1.0
|
|
HA
|
A:ALA41
|
4.0
|
25.0
|
1.0
|
|
N
|
A:GLY42
|
4.1
|
25.0
|
1.0
|
|
O
|
A:ALA41
|
4.1
|
25.0
|
1.0
|
|
N
|
A:ASP44
|
4.1
|
25.0
|
1.0
|
|
N
|
A:GLU59
|
4.1
|
25.0
|
1.0
|
|
CA
|
A:GLY58
|
4.2
|
25.0
|
1.0
|
|
HA
|
A:ASN43
|
4.2
|
25.0
|
1.0
|
|
HA3
|
A:GLY39
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLY58
|
4.3
|
25.0
|
1.0
|
|
CA
|
A:ALA41
|
4.4
|
25.0
|
1.0
|
|
OD1
|
A:ASP44
|
4.4
|
50.0
|
1.0
|
|
H
|
A:GLY42
|
4.4
|
25.0
|
1.0
|
|
C
|
A:GLY39
|
4.4
|
25.0
|
1.0
|
|
O
|
A:GLY39
|
4.4
|
25.0
|
1.0
|
|
HA2
|
A:GLY57
|
4.4
|
25.0
|
1.0
|
|
N
|
A:GLY60
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY42
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY60
|
4.4
|
25.0
|
1.0
|
|
O
|
A:GLY60
|
4.5
|
25.0
|
1.0
|
|
N
|
A:ALA41
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLU59
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLY57
|
4.5
|
25.0
|
1.0
|
|
N
|
A:TYR40
|
4.6
|
25.0
|
1.0
|
|
H
|
A:GLU59
|
4.6
|
25.0
|
1.0
|
|
CB
|
A:ASP62
|
4.6
|
25.0
|
1.0
|
|
C
|
A:GLY60
|
4.6
|
25.0
|
1.0
|
|
N
|
A:ASN43
|
4.6
|
25.0
|
1.0
|
|
HA3
|
A:GLY57
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:TYR40
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ASP44
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ASN43
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP62
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:CA202
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP44
|
4.8
|
25.0
|
1.0
|
|
HA3
|
A:GLY42
|
4.9
|
25.0
|
1.0
|
|
C
|
A:ASN43
|
4.9
|
25.0
|
1.0
|
|
HD11
|
A:LEU46
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:GLY39
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:CA206
|
4.9
|
25.0
|
1.0
|
|
H
|
A:TYR40
|
4.9
|
25.0
|
1.0
|
|
HA
|
A:ASP62
|
5.0
|
25.0
|
1.0
|
|
Calcium binding site 5 out
of 6 in 2ml3
Go back to
Calcium Binding Sites List in 2ml3
Calcium binding site 5 out
of 6 in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:25.0
occ:1.00
|
OD1
|
A:ASP82
|
2.4
|
50.0
|
1.0
|
|
OD1
|
A:ASP71
|
2.4
|
25.0
|
1.0
|
|
OD2
|
A:ASP53
|
2.4
|
50.0
|
1.0
|
|
O
|
A:GLY49
|
2.5
|
25.0
|
1.0
|
|
O
|
A:GLY51
|
2.5
|
25.0
|
1.0
|
|
OD2
|
A:ASP82
|
2.5
|
50.0
|
1.0
|
|
CG
|
A:ASP82
|
2.8
|
25.0
|
1.0
|
|
H
|
A:SER72
|
3.2
|
25.0
|
1.0
|
|
HA3
|
A:GLY48
|
3.3
|
25.0
|
1.0
|
|
CG
|
A:ASP53
|
3.6
|
25.0
|
1.0
|
|
H
|
A:ASP53
|
3.6
|
25.0
|
1.0
|
|
CG
|
A:ASP71
|
3.6
|
25.0
|
1.0
|
|
HB2
|
A:ASP53
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY49
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY51
|
3.7
|
25.0
|
1.0
|
|
N
|
A:GLY49
|
4.0
|
25.0
|
1.0
|
|
C
|
A:GLY48
|
4.0
|
25.0
|
1.0
|
|
HA
|
A:ARG52
|
4.0
|
25.0
|
1.0
|
|
H
|
A:GLY49
|
4.0
|
25.0
|
1.0
|
|
HA
|
A:ASP71
|
4.1
|
25.0
|
1.0
|
|
CA
|
A:GLY48
|
4.1
|
25.0
|
1.0
|
|
CB
|
A:ASP53
|
4.2
|
25.0
|
1.0
|
|
N
|
A:SER72
|
4.2
|
25.0
|
1.0
|
|
O
|
A:PHE80
|
4.2
|
25.0
|
1.0
|
|
N
|
A:ASP53
|
4.2
|
25.0
|
1.0
|
|
OD2
|
A:ASP71
|
4.2
|
25.0
|
1.0
|
|
CB
|
A:ASP82
|
4.3
|
25.0
|
1.0
|
|
N
|
A:GLY51
|
4.3
|
25.0
|
1.0
|
|
C
|
A:ALA50
|
4.4
|
25.0
|
1.0
|
|
O
|
A:GLY48
|
4.4
|
25.0
|
1.0
|
|
CA
|
A:GLY49
|
4.5
|
25.0
|
1.0
|
|
HA
|
A:SER72
|
4.5
|
25.0
|
1.0
|
|
OD1
|
A:ASP53
|
4.5
|
50.0
|
1.0
|
|
O
|
A:ALA50
|
4.6
|
25.0
|
1.0
|
|
HB2
|
A:SER72
|
4.6
|
25.0
|
1.0
|
|
H
|
A:GLY51
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY51
|
4.6
|
25.0
|
1.0
|
|
HA
|
A:ALA50
|
4.6
|
25.0
|
1.0
|
|
N
|
A:ARG52
|
4.7
|
25.0
|
1.0
|
|
CA
|
A:ARG52
|
4.7
|
25.0
|
1.0
|
|
N
|
A:ALA50
|
4.7
|
25.0
|
1.0
|
|
HA
|
A:ASP82
|
4.7
|
25.0
|
1.0
|
|
HB2
|
A:ASP82
|
4.8
|
25.0
|
1.0
|
|
CB
|
A:ASP71
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:ASP71
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:ALA50
|
4.8
|
25.0
|
1.0
|
|
HB3
|
A:ASP82
|
4.8
|
25.0
|
1.0
|
|
HA2
|
A:GLY48
|
4.8
|
25.0
|
1.0
|
|
C
|
A:ARG52
|
4.9
|
25.0
|
1.0
|
|
H
|
A:GLY48
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:CA203
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:ASP53
|
4.9
|
25.0
|
1.0
|
|
HB3
|
A:PHE80
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:SER72
|
4.9
|
25.0
|
1.0
|
|
Calcium binding site 6 out
of 6 in 2ml3
Go back to
Calcium Binding Sites List in 2ml3
Calcium binding site 6 out
of 6 in the Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Solution Structure of ALGE6R3 Subunit From the Azotobacter Vinelandii Mannuronan C5-Epimerase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca206
b:25.0
occ:1.00
|
O
|
A:GLY58
|
2.5
|
25.0
|
1.0
|
|
OD1
|
A:ASP92
|
2.5
|
75.0
|
1.0
|
|
OD2
|
A:ASP62
|
2.5
|
50.0
|
1.0
|
|
O
|
A:GLY60
|
2.6
|
25.0
|
1.0
|
|
OD2
|
A:ASP92
|
2.7
|
75.0
|
1.0
|
|
CG
|
A:ASP92
|
3.0
|
25.0
|
1.0
|
|
CG
|
A:ASP62
|
3.6
|
25.0
|
1.0
|
|
HB3
|
A:ASP88
|
3.7
|
25.0
|
1.0
|
|
H
|
A:ASP62
|
3.7
|
25.0
|
1.0
|
|
C
|
A:GLY58
|
3.7
|
25.0
|
1.0
|
|
HB2
|
A:ASP88
|
3.8
|
25.0
|
1.0
|
|
C
|
A:GLY60
|
3.8
|
25.0
|
1.0
|
|
HB2
|
A:ASP62
|
3.9
|
25.0
|
1.0
|
|
HA
|
A:GLU59
|
4.0
|
25.0
|
1.0
|
|
H
|
A:ASP88
|
4.1
|
25.0
|
1.0
|
|
HA3
|
A:GLY57
|
4.1
|
25.0
|
1.0
|
|
HA
|
A:ALA61
|
4.2
|
25.0
|
1.0
|
|
C
|
A:GLU59
|
4.2
|
25.0
|
1.0
|
|
N
|
A:GLY60
|
4.2
|
25.0
|
1.0
|
|
CB
|
A:ASP88
|
4.3
|
25.0
|
1.0
|
|
CB
|
A:ASP62
|
4.3
|
25.0
|
1.0
|
|
N
|
A:ASP62
|
4.4
|
25.0
|
1.0
|
|
N
|
A:GLY58
|
4.4
|
25.0
|
1.0
|
|
HB2
|
A:GLN91
|
4.4
|
25.0
|
1.0
|
|
H
|
A:GLY60
|
4.4
|
25.0
|
1.0
|
|
OD1
|
A:ASP62
|
4.4
|
50.0
|
1.0
|
|
C
|
A:GLY57
|
4.5
|
25.0
|
1.0
|
|
CA
|
A:GLU59
|
4.5
|
25.0
|
1.0
|
|
CB
|
A:ASP92
|
4.5
|
25.0
|
1.0
|
|
O
|
A:GLU59
|
4.5
|
25.0
|
1.0
|
|
N
|
A:GLU59
|
4.5
|
25.0
|
1.0
|
|
H
|
A:GLY58
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY58
|
4.6
|
25.0
|
1.0
|
|
CA
|
A:GLY60
|
4.7
|
25.0
|
1.0
|
|
N
|
A:ALA61
|
4.8
|
25.0
|
1.0
|
|
O
|
A:GLY57
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:ALA61
|
4.8
|
25.0
|
1.0
|
|
CA
|
A:GLY57
|
4.9
|
25.0
|
1.0
|
|
N
|
A:ASP88
|
4.9
|
25.0
|
1.0
|
|
HE1
|
A:PHE64
|
4.9
|
25.0
|
1.0
|
|
HB3
|
A:ASP92
|
4.9
|
25.0
|
1.0
|
|
O
|
A:ASP86
|
4.9
|
25.0
|
1.0
|
|
CA
|
A:CA204
|
4.9
|
25.0
|
1.0
|
|
OE1
|
A:GLN91
|
4.9
|
25.0
|
1.0
|
|
HB2
|
A:ASP92
|
5.0
|
25.0
|
1.0
|
|
Reference:
E.Buchinger,
R.Wimmer,
F.L.Aachmann.
Structural and Functional Characterization of the R-Modules in Alginate C-5 Epimerases ALGE4 and ALGE6 From Azotobacter Vinelandii To Be Published.
Page generated: Fri Jul 12 14:18:41 2024
|
