Calcium in PDB 2mzh: uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane

All present enzymatic activity of uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane:
3.4.24.23;

The structure of uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane also contains other interesting chemical elements:

Zinc

(Zn)

40 atoms

The binding sites of Calcium atom in the uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane (pdb code 2mzh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane, PDB code: 2mzh:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:0.0 occ:1.00 O A:GLY165 2.4 0.0 1.0 OD2 A:ASP169 2.4 0.0 1.0 O A:ASP133 2.4 0.0 1.0 OD1 A:ASP169 2.4 0.0 1.0 O A:GLY167 2.4 0.0 1.0 CG A:ASP169 2.8 0.0 1.0 C A:GLY167 3.5 0.0 1.0 C A:GLY165 3.6 0.0 1.0 C A:ASP133 3.6 0.0 1.0 HA A:ASP133 3.8 0.0 1.0 H A:MET135 3.8 0.0 1.0 N A:GLY167 3.9 0.0 1.0 H A:GLY167 3.9 0.0 1.0 HA A:ILE134 4.0 0.0 1.0 HA3 A:GLY168 4.1 0.0 1.0 HA A:LEU166 4.1 0.0 1.0 C A:LEU166 4.2 0.0 1.0 HH2 A:TRP84 4.3 0.0 1.0 O A:ALA132 4.3 0.0 1.0 CB A:ASP169 4.3 0.0 1.0 CA A:GLY167 4.4 0.0 1.0 CA A:ASP133 4.4 0.0 1.0 N A:LEU166 4.4 0.0 1.0 HB2 A:MET135 4.4 0.0 1.0 HA2 A:GLY165 4.4 0.0 1.0 N A:GLY168 4.5 0.0 1.0 CA A:LEU166 4.5 0.0 1.0 O A:GLY163 4.6 0.0 1.0 N A:ILE134 4.6 0.0 1.0 N A:MET135 4.6 0.0 1.0 CA A:GLY165 4.6 0.0 1.0 H A:ASP169 4.7 0.0 1.0 HG3 A:MET135 4.7 0.0 1.0 N A:ASP169 4.7 0.0 1.0 CA A:GLY168 4.7 0.0 1.0 CA A:ILE134 4.8 0.0 1.0 HB2 A:ASP169 4.8 0.0 1.0 O A:LEU166 4.9 0.0 1.0 C A:GLY168 4.9 0.0 1.0 HB3 A:ASP133 4.9 0.0 1.0 CA A:ASP169 4.9 0.0 1.0 HB3 A:ASP169 5.0 0.0 1.0

Calcium binding site 2 out of 2 in the uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Solution Structure of the Pro Form of Human Matrilysin (Prommp-7) in Complex with Zwitterionic Membrane within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:0.0 occ:1.00 OD2 A:ASP173 2.2 0.0 1.0 OD2 A:ASP150 2.3 0.0 1.0 O A:GLY153 2.3 0.0 1.0 OE1 A:GLU176 2.3 0.0 1.0 O A:GLY151 2.3 0.0 1.0 O A:THR155 2.4 0.0 1.0 OD1 A:ASP150 2.4 0.0 1.0 CG A:ASP150 2.7 0.0 1.0 C A:GLY153 3.3 0.0 1.0 CG A:ASP173 3.4 0.0 1.0 H A:GLY153 3.4 0.0 1.0 CD A:GLU176 3.5 0.0 1.0 C A:GLY151 3.5 0.0 1.0 C A:THR155 3.6 0.0 1.0 N A:GLY153 3.6 0.0 1.0 HA A:PRO152 3.8 0.0 1.0 HA A:LEU156 3.9 0.0 1.0 HB2 A:GLU176 4.0 0.0 1.0 C A:PRO152 4.1 0.0 1.0 CA A:GLY153 4.1 0.0 1.0 H A:GLY151 4.1 0.0 1.0 OD1 A:ASP173 4.2 0.0 1.0 OE2 A:GLU176 4.2 0.0 1.0 CB A:ASP150 4.2 0.0 1.0 C A:ASN154 4.2 0.0 1.0 O A:ASN154 4.2 0.0 1.0 CA A:PRO152 4.3 0.0 1.0 N A:GLY151 4.3 0.0 1.0 HB3 A:LEU156 4.4 0.0 1.0 N A:PRO152 4.4 0.0 1.0 N A:ASN154 4.4 0.0 1.0 N A:THR155 4.4 0.0 1.0 CB A:ASP173 4.4 0.0 1.0 HB3 A:ASP173 4.4 0.0 1.0 CA A:THR155 4.4 0.0 1.0 HB2 A:ASP173 4.4 0.0 1.0 CG A:GLU176 4.5 0.0 1.0 CA A:GLY151 4.5 0.0 1.0 HG21 A:THR155 4.5 0.0 1.0 N A:LEU156 4.5 0.0 1.0 HG22 A:THR155 4.5 0.0 1.0 HA2 A:GLY153 4.6 0.0 1.0 CA A:LEU156 4.6 0.0 1.0 HG2 A:GLU176 4.6 0.0 1.0 H A:THR155 4.7 0.0 1.0 C A:ASP150 4.7 0.0 1.0 CB A:GLU176 4.7 0.0 1.0 HB3 A:ASP150 4.7 0.0 1.0 O A:PRO152 4.8 0.0 1.0 HA3 A:GLY153 4.9 0.0 1.0 CA A:ASN154 4.9 0.0 1.0 H A:GLU176 4.9 0.0 1.0 HB2 A:ASP150 4.9 0.0 1.0 HA2 A:GLY151 4.9 0.0 1.0 HA A:GLU176 4.9 0.0 1.0 CG2 A:THR155 5.0 0.0 1.0 CA A:ASP150 5.0 0.0 1.0

S.H.Prior, Y.G.Fulcher, R.K.Koppisetti, A.Jurkevich, S.R.Van Doren. Charge-Triggered Membrane Insertion of Matrix Metalloproteinase-7, Supporter of Innate Immunity and Tumors. Structure V. 23 2099 2015.
ISSN: ISSN 0969-2126
PubMed: 26439767
DOI: 10.1016/J.STR.2015.08.013