Atomistry » Calcium » PDB 2o8o-2ovu » 2oai
Atomistry »
  Calcium »
    PDB 2o8o-2ovu »
      2oai »

Calcium in PDB 2oai: The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin.

Protein crystallography data

The structure of The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin., PDB code: 2oai was solved by M.E.Cuff, L.Volkart, J.Abdullah, T.A.Binkowski, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.08 / 1.80
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 87.905, 87.905, 87.905, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. (pdb code 2oai). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin., PDB code: 2oai:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2oai

Go back to Calcium Binding Sites List in 2oai
Calcium binding site 1 out of 2 in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:20.5
occ:0.50
OD2 A:ASP83 2.6 46.6 1.0
OD2 A:ASP76 2.7 47.9 1.0
OD2 A:ASP78 2.8 45.6 1.0
OD1 A:ASP78 3.1 46.3 1.0
CG A:ASP78 3.3 48.6 1.0
CG A:ASP83 3.5 47.0 1.0
CG A:ASP76 3.7 47.1 1.0
CA A:CA102 4.0 27.4 1.0
CB A:ASP83 4.1 47.2 1.0
OD1 A:ASP76 4.3 46.1 1.0
OD1 A:ASP83 4.4 47.0 1.0
O A:HOH216 4.7 29.2 1.0
CB A:ASP76 4.8 47.8 1.0
CB A:ASP78 4.8 47.2 1.0
NH2 A:ARG81 5.0 45.1 0.7

Calcium binding site 2 out of 2 in 2oai

Go back to Calcium Binding Sites List in 2oai
Calcium binding site 2 out of 2 in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:27.4
occ:1.00
OD1 A:ASP78 2.4 46.3 1.0
OD1 A:ASP76 2.4 46.1 1.0
O A:LEU77 2.4 47.7 1.0
O A:HOH207 2.5 28.7 1.0
OD2 A:ASP76 3.0 47.9 1.0
CG A:ASP76 3.0 47.1 1.0
C A:LEU77 3.5 47.9 1.0
CG A:ASP78 3.6 48.6 1.0
CA A:CA101 4.0 20.5 0.5
CA A:ASP78 4.1 47.9 1.0
N A:ASP78 4.2 47.0 1.0
N A:LEU77 4.3 48.0 1.0
OD2 A:ASP78 4.4 45.6 1.0
CB A:ASP78 4.4 47.2 1.0
O A:HOH240 4.5 48.1 1.0
CB A:ASP76 4.5 47.8 1.0
CA A:LEU77 4.6 48.5 1.0
C A:ASP76 5.0 48.0 1.0

Reference:

M.E.Cuff, L.Volkart, J.Abdullah, T.A.Binkowski, A.Joachimiak. The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. To Be Published.
Page generated: Sat Dec 12 03:48:27 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy