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Calcium in PDB 2oai: The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin.

Protein crystallography data

The structure of The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin., PDB code: 2oai was solved by M.E.Cuff, L.Volkart, J.Abdullah, T.A.Binkowski, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.08 / 1.80
Space group I 2 3
Cell size a, b, c (Å), α, β, γ (°) 87.905, 87.905, 87.905, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20

Calcium Binding Sites:

The binding sites of Calcium atom in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. (pdb code 2oai). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin., PDB code: 2oai:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2oai

Go back to Calcium Binding Sites List in 2oai
Calcium binding site 1 out of 2 in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:20.5
occ:0.50
OD2 A:ASP83 2.6 46.6 1.0
OD2 A:ASP76 2.7 47.9 1.0
OD2 A:ASP78 2.8 45.6 1.0
OD1 A:ASP78 3.1 46.3 1.0
CG A:ASP78 3.3 48.6 1.0
CG A:ASP83 3.5 47.0 1.0
CG A:ASP76 3.7 47.1 1.0
CA A:CA102 4.0 27.4 1.0
CB A:ASP83 4.1 47.2 1.0
OD1 A:ASP76 4.3 46.1 1.0
OD1 A:ASP83 4.4 47.0 1.0
O A:HOH216 4.7 29.2 1.0
CB A:ASP76 4.8 47.8 1.0
CB A:ASP78 4.8 47.2 1.0
NH2 A:ARG81 5.0 45.1 0.7

Calcium binding site 2 out of 2 in 2oai

Go back to Calcium Binding Sites List in 2oai
Calcium binding site 2 out of 2 in the The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:27.4
occ:1.00
OD1 A:ASP78 2.4 46.3 1.0
OD1 A:ASP76 2.4 46.1 1.0
O A:LEU77 2.4 47.7 1.0
O A:HOH207 2.5 28.7 1.0
OD2 A:ASP76 3.0 47.9 1.0
CG A:ASP76 3.0 47.1 1.0
C A:LEU77 3.5 47.9 1.0
CG A:ASP78 3.6 48.6 1.0
CA A:CA101 4.0 20.5 0.5
CA A:ASP78 4.1 47.9 1.0
N A:ASP78 4.2 47.0 1.0
N A:LEU77 4.3 48.0 1.0
OD2 A:ASP78 4.4 45.6 1.0
CB A:ASP78 4.4 47.2 1.0
O A:HOH240 4.5 48.1 1.0
CB A:ASP76 4.5 47.8 1.0
CA A:LEU77 4.6 48.5 1.0
C A:ASP76 5.0 48.0 1.0

Reference:

M.E.Cuff, L.Volkart, J.Abdullah, T.A.Binkowski, A.Joachimiak. The Structure of Transporter Associated Domain CORC_HLYC From A Xylella Fastidiosa TEMECULA1 Hemolysin. To Be Published.
Page generated: Fri Jul 12 14:36:41 2024

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