Calcium in PDB 2opo: Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
Protein crystallography data
The structure of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3, PDB code: 2opo
was solved by
P.Verdino,
W.Keller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
30.00 /
1.75
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
72.240,
73.874,
68.939,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19.8 /
24.7
|
Calcium Binding Sites:
The binding sites of Calcium atom in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
(pdb code 2opo). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the
Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3, PDB code: 2opo:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Calcium binding site 1 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 1 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca301
b:19.8
occ:1.00
|
OD1
|
A:ASP21
|
2.2
|
16.1
|
1.0
|
|
O
|
A:LYS27
|
2.3
|
20.8
|
1.0
|
|
OD1
|
A:ASP25
|
2.4
|
15.9
|
1.0
|
|
O
|
A:HOH303
|
2.4
|
24.4
|
1.0
|
|
OE1
|
A:GLU32
|
2.4
|
18.4
|
1.0
|
|
OD1
|
A:ASN23
|
2.4
|
19.8
|
1.0
|
|
OE2
|
A:GLU32
|
2.4
|
17.0
|
1.0
|
|
CD
|
A:GLU32
|
2.8
|
17.9
|
1.0
|
|
CG
|
A:ASP25
|
3.2
|
18.6
|
1.0
|
|
CG
|
A:ASN23
|
3.3
|
20.9
|
1.0
|
|
CG
|
A:ASP21
|
3.4
|
17.0
|
1.0
|
|
C
|
A:LYS27
|
3.6
|
20.5
|
1.0
|
|
OD2
|
A:ASP25
|
3.6
|
20.0
|
1.0
|
|
ND2
|
A:ASN23
|
3.8
|
26.1
|
1.0
|
|
OD2
|
A:ASP21
|
4.2
|
18.7
|
1.0
|
|
N
|
A:ASP25
|
4.2
|
17.4
|
1.0
|
|
CG
|
A:GLU32
|
4.3
|
18.0
|
1.0
|
|
CB
|
A:ASP21
|
4.3
|
18.8
|
1.0
|
|
N
|
A:LYS27
|
4.3
|
20.4
|
1.0
|
|
CA
|
A:ASP21
|
4.3
|
17.7
|
1.0
|
|
CB
|
A:ASP25
|
4.4
|
17.4
|
1.0
|
|
CA
|
A:ILE28
|
4.4
|
18.9
|
1.0
|
|
N
|
A:ILE28
|
4.4
|
19.4
|
1.0
|
|
N
|
A:ASN23
|
4.5
|
17.3
|
1.0
|
|
CA
|
A:LYS27
|
4.5
|
21.2
|
1.0
|
|
N
|
A:GLY24
|
4.5
|
17.2
|
1.0
|
|
CG
|
A:LYS27
|
4.6
|
24.4
|
1.0
|
|
CB
|
A:ASN23
|
4.6
|
19.2
|
1.0
|
|
N
|
A:SER29
|
4.6
|
19.7
|
1.0
|
|
C
|
A:ASP21
|
4.6
|
17.2
|
1.0
|
|
O
|
A:HOH331
|
4.7
|
27.5
|
1.0
|
|
CA
|
A:ASP25
|
4.7
|
18.2
|
1.0
|
|
N
|
A:GLY26
|
4.9
|
18.4
|
1.0
|
|
CA
|
A:ASN23
|
4.9
|
17.9
|
1.0
|
|
O
|
A:HOH310
|
4.9
|
18.9
|
1.0
|
|
N
|
A:THR22
|
4.9
|
17.3
|
1.0
|
|
C
|
A:ASN23
|
4.9
|
17.0
|
1.0
|
|
Calcium binding site 2 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 2 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca302
b:19.4
occ:1.00
|
OD1
|
A:ASP56
|
2.2
|
23.0
|
1.0
|
|
O
|
A:PHE62
|
2.3
|
20.0
|
1.0
|
|
OD1
|
A:ASP60
|
2.3
|
22.5
|
1.0
|
|
OD1
|
A:ASP58
|
2.4
|
20.3
|
1.0
|
|
OE1
|
A:GLU67
|
2.4
|
18.5
|
1.0
|
|
O
|
A:HOH304
|
2.5
|
23.8
|
1.0
|
|
OE2
|
A:GLU67
|
2.5
|
20.0
|
1.0
|
|
CD
|
A:GLU67
|
2.8
|
19.5
|
1.0
|
|
CG
|
A:ASP60
|
3.2
|
22.3
|
1.0
|
|
CG
|
A:ASP56
|
3.3
|
22.1
|
1.0
|
|
CG
|
A:ASP58
|
3.4
|
25.6
|
1.0
|
|
C
|
A:PHE62
|
3.6
|
20.1
|
1.0
|
|
OD2
|
A:ASP60
|
3.7
|
26.6
|
1.0
|
|
OD2
|
A:ASP58
|
3.8
|
28.2
|
1.0
|
|
OD2
|
A:ASP56
|
4.1
|
23.8
|
1.0
|
|
CA
|
A:ASP56
|
4.2
|
20.6
|
1.0
|
|
CB
|
A:ASP56
|
4.2
|
20.9
|
1.0
|
|
N
|
A:ASP60
|
4.3
|
19.9
|
1.0
|
|
N
|
A:PHE62
|
4.3
|
18.6
|
1.0
|
|
CG
|
A:GLU67
|
4.3
|
18.8
|
1.0
|
|
N
|
A:ASP58
|
4.3
|
21.9
|
1.0
|
|
CB
|
A:ASP60
|
4.4
|
19.9
|
1.0
|
|
C
|
A:ASP56
|
4.4
|
21.4
|
1.0
|
|
CA
|
A:ILE63
|
4.5
|
19.5
|
1.0
|
|
N
|
A:SER64
|
4.5
|
19.6
|
1.0
|
|
N
|
A:ILE63
|
4.5
|
19.1
|
1.0
|
|
CA
|
A:PHE62
|
4.5
|
19.3
|
1.0
|
|
CB
|
A:ASP58
|
4.6
|
21.0
|
1.0
|
|
N
|
A:GLY59
|
4.6
|
21.4
|
1.0
|
|
N
|
A:THR57
|
4.6
|
21.3
|
1.0
|
|
O
|
A:HOH367
|
4.7
|
18.0
|
0.3
|
|
CA
|
A:ASP60
|
4.7
|
20.6
|
1.0
|
|
CA
|
A:ASP58
|
4.8
|
21.5
|
1.0
|
|
N
|
A:GLY61
|
4.8
|
20.5
|
1.0
|
|
O
|
A:HOH354
|
4.9
|
30.1
|
1.0
|
|
O
|
A:HOH335
|
4.9
|
36.2
|
1.0
|
|
O
|
A:ASP56
|
4.9
|
19.9
|
1.0
|
|
C
|
A:ASP58
|
4.9
|
22.1
|
1.0
|
|
C
|
A:ILE63
|
4.9
|
19.5
|
1.0
|
|
C
|
A:ASP60
|
5.0
|
20.9
|
1.0
|
|
Calcium binding site 3 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 3 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca303
b:17.8
occ:1.00
|
OD1
|
B:ASP21
|
2.2
|
26.9
|
1.0
|
|
O
|
B:LYS27
|
2.2
|
24.5
|
1.0
|
|
OD1
|
B:ASN23
|
2.3
|
28.9
|
1.0
|
|
O
|
B:HOH405
|
2.4
|
19.6
|
1.0
|
|
OE1
|
B:GLU32
|
2.4
|
24.8
|
1.0
|
|
OD1
|
B:ASP25
|
2.5
|
27.1
|
1.0
|
|
OE2
|
B:GLU32
|
2.6
|
27.1
|
1.0
|
|
CD
|
B:GLU32
|
2.9
|
23.9
|
1.0
|
|
CG
|
B:ASP25
|
3.3
|
33.7
|
1.0
|
|
CG
|
B:ASN23
|
3.4
|
34.9
|
1.0
|
|
CG
|
B:ASP21
|
3.4
|
27.5
|
1.0
|
|
C
|
B:LYS27
|
3.5
|
24.4
|
1.0
|
|
OD2
|
B:ASP25
|
3.6
|
32.3
|
1.0
|
|
ND2
|
B:ASN23
|
4.0
|
33.4
|
1.0
|
|
N
|
B:LYS27
|
4.2
|
25.4
|
1.0
|
|
OD2
|
B:ASP21
|
4.2
|
28.7
|
1.0
|
|
N
|
B:ASP25
|
4.3
|
31.2
|
1.0
|
|
CA
|
B:ASP21
|
4.3
|
25.2
|
1.0
|
|
CB
|
B:ASP21
|
4.3
|
25.9
|
1.0
|
|
CG
|
B:GLU32
|
4.4
|
22.3
|
1.0
|
|
CA
|
B:ILE28
|
4.4
|
21.2
|
0.5
|
|
N
|
B:ILE28
|
4.4
|
22.6
|
1.0
|
|
CA
|
B:LYS27
|
4.4
|
25.0
|
1.0
|
|
CA
|
B:ILE28
|
4.4
|
21.9
|
0.5
|
|
N
|
B:ASN23
|
4.4
|
29.9
|
1.0
|
|
CB
|
B:ASP25
|
4.5
|
30.8
|
1.0
|
|
N
|
B:SER29
|
4.5
|
21.2
|
1.0
|
|
CB
|
B:ASN23
|
4.5
|
32.5
|
1.0
|
|
CG
|
B:LYS27
|
4.6
|
31.9
|
1.0
|
|
C
|
B:ASP21
|
4.6
|
26.8
|
1.0
|
|
N
|
B:GLY24
|
4.6
|
32.1
|
1.0
|
|
CA
|
B:ASP25
|
4.7
|
30.3
|
1.0
|
|
O
|
B:HOH451
|
4.8
|
25.6
|
1.0
|
|
CA
|
B:ASN23
|
4.8
|
32.4
|
1.0
|
|
N
|
B:THR22
|
4.8
|
25.2
|
1.0
|
|
N
|
B:GLY26
|
4.8
|
26.4
|
1.0
|
|
C
|
B:ASN23
|
4.9
|
32.7
|
1.0
|
|
C
|
B:ILE28
|
4.9
|
21.1
|
1.0
|
|
O
|
B:HOH464
|
4.9
|
22.5
|
0.5
|
|
Calcium binding site 4 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 4 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca304
b:25.4
occ:1.00
|
O
|
B:HOH406
|
2.3
|
33.6
|
1.0
|
|
OE1
|
B:GLU67
|
2.3
|
23.9
|
1.0
|
|
O
|
B:PHE62
|
2.3
|
24.3
|
1.0
|
|
OD1
|
B:ASP56
|
2.4
|
25.0
|
1.0
|
|
OD1
|
B:ASP60
|
2.4
|
30.7
|
1.0
|
|
OD1
|
B:ASP58
|
2.4
|
28.8
|
1.0
|
|
OE2
|
B:GLU67
|
2.7
|
29.0
|
1.0
|
|
CD
|
B:GLU67
|
2.8
|
25.4
|
1.0
|
|
CG
|
B:ASP60
|
3.2
|
32.3
|
1.0
|
|
CG
|
B:ASP58
|
3.3
|
32.5
|
1.0
|
|
CG
|
B:ASP56
|
3.4
|
23.4
|
1.0
|
|
C
|
B:PHE62
|
3.5
|
24.6
|
1.0
|
|
OD2
|
B:ASP60
|
3.7
|
35.7
|
1.0
|
|
OD2
|
B:ASP58
|
3.8
|
35.0
|
1.0
|
|
CB
|
B:ASP56
|
4.1
|
27.3
|
1.0
|
|
N
|
B:ASP60
|
4.2
|
32.2
|
1.0
|
|
N
|
B:PHE62
|
4.2
|
25.5
|
1.0
|
|
CA
|
B:ASP56
|
4.2
|
25.3
|
1.0
|
|
OD2
|
B:ASP56
|
4.2
|
28.0
|
1.0
|
|
CB
|
B:ASP60
|
4.3
|
31.8
|
1.0
|
|
CG
|
B:GLU67
|
4.3
|
22.3
|
1.0
|
|
CA
|
B:PHE62
|
4.4
|
25.4
|
1.0
|
|
N
|
B:ASP58
|
4.4
|
28.6
|
1.0
|
|
N
|
B:SER64
|
4.4
|
23.0
|
1.0
|
|
N
|
B:ILE63
|
4.4
|
24.5
|
1.0
|
|
N
|
B:GLY59
|
4.5
|
30.2
|
1.0
|
|
C
|
B:ASP56
|
4.5
|
27.8
|
1.0
|
|
CA
|
B:ILE63
|
4.5
|
23.5
|
1.0
|
|
CB
|
B:ASP58
|
4.6
|
29.7
|
1.0
|
|
CA
|
B:ASP60
|
4.6
|
32.0
|
1.0
|
|
N
|
B:GLY61
|
4.7
|
30.3
|
1.0
|
|
CB
|
B:PHE62
|
4.7
|
25.3
|
1.0
|
|
N
|
B:THR57
|
4.8
|
25.3
|
1.0
|
|
CA
|
B:ASP58
|
4.8
|
29.7
|
1.0
|
|
C
|
B:ASP58
|
4.8
|
30.4
|
1.0
|
|
O
|
B:HOH431
|
4.9
|
45.9
|
1.0
|
|
OG
|
B:SER64
|
4.9
|
23.4
|
1.0
|
|
C
|
B:ILE63
|
4.9
|
23.8
|
1.0
|
|
C
|
B:ASP60
|
5.0
|
31.5
|
1.0
|
|
O
|
B:HOH430
|
5.0
|
52.4
|
1.0
|
|
Calcium binding site 5 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 5 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca305
b:17.8
occ:1.00
|
OD1
|
C:ASP21
|
2.3
|
27.8
|
1.0
|
|
O
|
C:LYS27
|
2.3
|
24.3
|
1.0
|
|
O
|
C:HOH404
|
2.4
|
20.1
|
1.0
|
|
OD1
|
C:ASP25
|
2.4
|
27.2
|
1.0
|
|
OD1
|
C:ASN23
|
2.4
|
26.6
|
1.0
|
|
OE1
|
C:GLU32
|
2.5
|
21.7
|
1.0
|
|
OE2
|
C:GLU32
|
2.6
|
22.6
|
1.0
|
|
CD
|
C:GLU32
|
2.9
|
24.5
|
1.0
|
|
CG
|
C:ASP25
|
3.3
|
31.3
|
1.0
|
|
CG
|
C:ASP21
|
3.4
|
26.3
|
1.0
|
|
C
|
C:LYS27
|
3.5
|
24.4
|
1.0
|
|
CG
|
C:ASN23
|
3.6
|
31.7
|
1.0
|
|
OD2
|
C:ASP25
|
3.6
|
32.1
|
1.0
|
|
N
|
C:LYS27
|
4.2
|
28.3
|
1.0
|
|
CA
|
C:ASP21
|
4.2
|
24.2
|
1.0
|
|
CB
|
C:ASP21
|
4.2
|
23.6
|
1.0
|
|
OD2
|
C:ASP21
|
4.2
|
28.5
|
1.0
|
|
ND2
|
C:ASN23
|
4.3
|
34.8
|
1.0
|
|
N
|
C:ASP25
|
4.3
|
31.1
|
1.0
|
|
CG
|
C:GLU32
|
4.3
|
19.9
|
1.0
|
|
CA
|
C:LYS27
|
4.4
|
27.1
|
1.0
|
|
CA
|
C:ILE28
|
4.4
|
21.5
|
1.0
|
|
N
|
C:ILE28
|
4.4
|
22.9
|
1.0
|
|
CG
|
C:LYS27
|
4.4
|
33.8
|
1.0
|
|
C
|
C:ASP21
|
4.5
|
25.3
|
1.0
|
|
N
|
C:ASN23
|
4.5
|
27.2
|
1.0
|
|
N
|
C:GLY24
|
4.5
|
30.8
|
1.0
|
|
CB
|
C:ASP25
|
4.5
|
31.1
|
1.0
|
|
CB
|
C:ASN23
|
4.6
|
29.6
|
1.0
|
|
N
|
C:SER29
|
4.7
|
19.2
|
1.0
|
|
O
|
C:HOH412
|
4.8
|
22.4
|
1.0
|
|
N
|
C:THR22
|
4.8
|
24.9
|
1.0
|
|
CA
|
C:ASP25
|
4.8
|
32.2
|
1.0
|
|
N
|
C:GLY26
|
4.8
|
31.1
|
1.0
|
|
CB
|
C:LYS27
|
4.9
|
28.7
|
1.0
|
|
CA
|
C:ASN23
|
4.9
|
28.9
|
1.0
|
|
O
|
C:HOH484
|
4.9
|
44.8
|
1.0
|
|
C
|
C:ASN23
|
5.0
|
29.8
|
1.0
|
|
O
|
C:ASP21
|
5.0
|
24.1
|
1.0
|
|
Calcium binding site 6 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 6 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca306
b:17.1
occ:1.00
|
OD1
|
C:ASP60
|
2.3
|
24.5
|
1.0
|
|
O
|
C:PHE62
|
2.3
|
23.6
|
1.0
|
|
O
|
C:HOH405
|
2.4
|
23.3
|
1.0
|
|
OD1
|
C:ASP56
|
2.4
|
24.4
|
1.0
|
|
OD1
|
C:ASP58
|
2.4
|
25.9
|
1.0
|
|
OE1
|
C:GLU67
|
2.4
|
22.7
|
1.0
|
|
OE2
|
C:GLU67
|
2.5
|
24.7
|
1.0
|
|
CD
|
C:GLU67
|
2.8
|
22.9
|
1.0
|
|
CG
|
C:ASP60
|
3.2
|
27.9
|
1.0
|
|
CG
|
C:ASP58
|
3.3
|
28.0
|
1.0
|
|
CG
|
C:ASP56
|
3.5
|
22.7
|
1.0
|
|
C
|
C:PHE62
|
3.5
|
21.6
|
1.0
|
|
OD2
|
C:ASP60
|
3.7
|
28.1
|
1.0
|
|
OD2
|
C:ASP58
|
3.7
|
29.4
|
1.0
|
|
OD2
|
C:ASP56
|
4.2
|
24.6
|
1.0
|
|
CA
|
C:ASP56
|
4.2
|
24.2
|
1.0
|
|
N
|
C:PHE62
|
4.3
|
22.3
|
1.0
|
|
CB
|
C:ASP56
|
4.3
|
24.2
|
1.0
|
|
N
|
C:ASP60
|
4.3
|
23.6
|
1.0
|
|
CG
|
C:GLU67
|
4.3
|
20.8
|
1.0
|
|
CB
|
C:ASP60
|
4.4
|
24.1
|
1.0
|
|
N
|
C:ASP58
|
4.4
|
27.2
|
1.0
|
|
CA
|
C:PHE62
|
4.4
|
23.1
|
1.0
|
|
N
|
C:ILE63
|
4.5
|
20.9
|
1.0
|
|
N
|
C:SER64
|
4.5
|
19.4
|
1.0
|
|
CA
|
C:ILE63
|
4.5
|
20.4
|
1.0
|
|
C
|
C:ASP56
|
4.5
|
25.0
|
1.0
|
|
CB
|
C:ASP58
|
4.6
|
27.5
|
1.0
|
|
O
|
C:HOH437
|
4.6
|
29.3
|
1.0
|
|
N
|
C:THR57
|
4.7
|
25.3
|
1.0
|
|
N
|
C:GLY59
|
4.7
|
25.1
|
1.0
|
|
CA
|
C:ASP60
|
4.7
|
23.5
|
1.0
|
|
CA
|
C:ASP58
|
4.8
|
27.1
|
1.0
|
|
CB
|
C:PHE62
|
4.9
|
22.9
|
1.0
|
|
O
|
C:HOH407
|
4.9
|
26.8
|
1.0
|
|
N
|
C:GLY61
|
4.9
|
22.9
|
1.0
|
|
C
|
C:ASP58
|
4.9
|
27.6
|
1.0
|
|
Calcium binding site 7 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 7 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca307
b:19.5
occ:1.00
|
OD1
|
D:ASP21
|
2.2
|
25.2
|
1.0
|
|
O
|
D:LYS27
|
2.3
|
24.9
|
1.0
|
|
OD1
|
D:ASN23
|
2.4
|
26.6
|
1.0
|
|
OD1
|
D:ASP25
|
2.4
|
24.3
|
1.0
|
|
OE1
|
D:GLU32
|
2.4
|
22.8
|
1.0
|
|
O
|
D:HOH309
|
2.5
|
24.8
|
1.0
|
|
OE2
|
D:GLU32
|
2.6
|
25.1
|
1.0
|
|
CD
|
D:GLU32
|
2.8
|
25.4
|
1.0
|
|
CG
|
D:ASP25
|
3.2
|
30.7
|
1.0
|
|
CG
|
D:ASP21
|
3.3
|
26.5
|
1.0
|
|
CG
|
D:ASN23
|
3.4
|
32.7
|
1.0
|
|
C
|
D:LYS27
|
3.5
|
23.0
|
1.0
|
|
OD2
|
D:ASP25
|
3.6
|
33.2
|
1.0
|
|
ND2
|
D:ASN23
|
4.0
|
33.0
|
1.0
|
|
OD2
|
D:ASP21
|
4.2
|
25.5
|
1.0
|
|
CA
|
D:ASP21
|
4.2
|
27.4
|
1.0
|
|
N
|
D:ASP25
|
4.2
|
30.5
|
1.0
|
|
N
|
D:LYS27
|
4.3
|
22.5
|
1.0
|
|
CB
|
D:ASP21
|
4.3
|
26.6
|
1.0
|
|
N
|
D:ASN23
|
4.3
|
32.4
|
1.0
|
|
CB
|
D:ASP25
|
4.3
|
29.9
|
1.0
|
|
CG
|
D:GLU32
|
4.4
|
24.7
|
1.0
|
|
CA
|
D:ILE28
|
4.4
|
21.3
|
0.5
|
|
CA
|
D:ILE28
|
4.4
|
20.8
|
0.5
|
|
N
|
D:ILE28
|
4.4
|
22.4
|
1.0
|
|
N
|
D:SER29
|
4.4
|
22.8
|
1.0
|
|
C
|
D:ASP21
|
4.4
|
27.9
|
1.0
|
|
CA
|
D:LYS27
|
4.5
|
23.6
|
1.0
|
|
N
|
D:THR22
|
4.5
|
29.3
|
1.0
|
|
CB
|
D:ASN23
|
4.5
|
32.6
|
1.0
|
|
N
|
D:GLY24
|
4.5
|
32.4
|
1.0
|
|
CA
|
D:ASP25
|
4.7
|
29.1
|
1.0
|
|
CA
|
D:ASN23
|
4.7
|
33.4
|
1.0
|
|
CG
|
D:LYS27
|
4.7
|
30.3
|
1.0
|
|
C
|
D:ASN23
|
4.8
|
32.4
|
1.0
|
|
N
|
D:GLY26
|
4.8
|
25.9
|
1.0
|
|
O
|
D:HOH323
|
4.8
|
29.5
|
1.0
|
|
C
|
D:ILE28
|
4.9
|
21.0
|
1.0
|
|
O
|
D:HOH365
|
4.9
|
17.1
|
0.5
|
|
C
|
D:ASP25
|
5.0
|
29.3
|
1.0
|
|
CB
|
D:SER29
|
5.0
|
23.7
|
1.0
|
|
O
|
D:HOH365
|
5.0
|
24.9
|
0.5
|
|
Calcium binding site 8 out
of 8 in 2opo
Go back to
Calcium Binding Sites List in 2opo
Calcium binding site 8 out
of 8 in the Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the Calcium-Binding Pollen Allergen Che A 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca308
b:21.6
occ:1.00
|
O
|
D:HOH310
|
2.2
|
29.5
|
1.0
|
|
OD1
|
D:ASP56
|
2.2
|
25.4
|
1.0
|
|
OD1
|
D:ASP58
|
2.3
|
25.1
|
1.0
|
|
O
|
D:PHE62
|
2.4
|
24.9
|
1.0
|
|
OD1
|
D:ASP60
|
2.4
|
26.5
|
1.0
|
|
OE1
|
D:GLU67
|
2.4
|
25.4
|
1.0
|
|
OE2
|
D:GLU67
|
2.5
|
24.8
|
1.0
|
|
CD
|
D:GLU67
|
2.8
|
23.5
|
1.0
|
|
CG
|
D:ASP60
|
3.2
|
29.4
|
1.0
|
|
CG
|
D:ASP56
|
3.3
|
29.7
|
1.0
|
|
CG
|
D:ASP58
|
3.3
|
33.5
|
1.0
|
|
C
|
D:PHE62
|
3.6
|
24.9
|
1.0
|
|
OD2
|
D:ASP60
|
3.6
|
28.8
|
1.0
|
|
OD2
|
D:ASP58
|
3.8
|
35.9
|
1.0
|
|
CB
|
D:ASP56
|
4.1
|
29.1
|
1.0
|
|
OD2
|
D:ASP56
|
4.1
|
29.6
|
1.0
|
|
N
|
D:ASP60
|
4.2
|
28.9
|
1.0
|
|
CA
|
D:ASP56
|
4.2
|
29.0
|
1.0
|
|
N
|
D:PHE62
|
4.3
|
25.4
|
1.0
|
|
CB
|
D:ASP60
|
4.3
|
28.3
|
1.0
|
|
CG
|
D:GLU67
|
4.3
|
22.3
|
1.0
|
|
N
|
D:ASP58
|
4.4
|
33.1
|
1.0
|
|
N
|
D:SER64
|
4.4
|
24.1
|
1.0
|
|
CA
|
D:PHE62
|
4.4
|
24.8
|
1.0
|
|
N
|
D:ILE63
|
4.5
|
24.1
|
1.0
|
|
C
|
D:ASP56
|
4.5
|
30.3
|
1.0
|
|
CA
|
D:ILE63
|
4.5
|
22.5
|
1.0
|
|
CB
|
D:ASP58
|
4.5
|
32.1
|
1.0
|
|
CA
|
D:ASP60
|
4.6
|
27.9
|
1.0
|
|
N
|
D:GLY59
|
4.6
|
30.8
|
1.0
|
|
CB
|
D:PHE62
|
4.7
|
25.4
|
1.0
|
|
CA
|
D:ASP58
|
4.7
|
32.4
|
1.0
|
|
N
|
D:THR57
|
4.8
|
31.0
|
1.0
|
|
N
|
D:GLY61
|
4.8
|
25.4
|
1.0
|
|
C
|
D:ASP58
|
4.8
|
32.3
|
1.0
|
|
C
|
D:ASP60
|
4.9
|
26.5
|
1.0
|
|
O
|
D:HOH351
|
4.9
|
46.0
|
1.0
|
|
C
|
D:ILE63
|
4.9
|
22.8
|
1.0
|
|
O
|
D:HOH329
|
4.9
|
35.3
|
1.0
|
|
OG
|
D:SER64
|
4.9
|
22.7
|
1.0
|
|
CB
|
D:SER64
|
5.0
|
25.4
|
1.0
|
|
O
|
D:HOH322
|
5.0
|
43.5
|
1.0
|
|
O
|
D:ASP56
|
5.0
|
29.1
|
1.0
|
|
Reference:
P.Verdino,
R.Barderas,
M.Villalba,
K.Westritschnig,
R.Valenta,
R.Rodriguez,
W.Keller.
Three-Dimensional Structure of the Cross-Reactive Pollen Allergen Che A 3: Visualizing Cross-Reactivity on the Molecular Surfaces of Weed, Grass, and Tree Pollen Allergens. J.Immunol. V. 180 2313 2008.
ISSN: ISSN 0022-1767
PubMed: 18250440
Page generated: Fri Jul 12 14:40:52 2024
|
