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Calcium in PDB 2qea: Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution, PDB code: 2qea was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 2.46
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 73.673, 73.673, 367.524, 90.00, 90.00, 120.00
R / Rfree (%) 23.1 / 27.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution (pdb code 2qea). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution, PDB code: 2qea:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 2qea

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Calcium binding site 1 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca160

b:51.1
occ:1.00
 OE2 A:GLU13 2.6 46.3 1.0
OD1 A:ASP37 2.8 52.5 1.0
OE1 A:GLU13 3.0 46.1 1.0
CD A:GLU13 3.2 47.8 1.0
CG A:ASP37 3.6 51.5 1.0
OD2 A:ASP37 3.8 49.9 1.0
CA A:CA161 4.3 43.5 1.0
OD1 A:ASP36 4.4 55.1 1.0
CG A:GLU13 4.6 48.9 1.0
N A:ASP37 4.7 52.0 1.0
OD1 A:ASP38 4.7 59.0 1.0
O A:HOH163 4.9 36.0 1.0
CB A:ASP37 4.9 51.9 1.0

Calcium binding site 2 out of 7 in 2qea

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Calcium binding site 2 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca161

b:43.5
occ:1.00
 O A:ASP10 2.4 43.9 1.0
OE1 A:GLU13 2.4 46.1 1.0
OD1 A:ASP10 2.5 44.5 1.0
OD2 A:ASP37 2.6 49.9 1.0
O A:HOH163 2.7 36.0 1.0
C A:ASP10 3.3 45.1 1.0
CD A:GLU13 3.6 47.8 1.0
CG A:ASP37 3.6 51.5 1.0
CA A:ASP10 3.7 44.9 1.0
CG A:ASP10 3.7 44.4 1.0
CA A:CA160 4.3 51.1 1.0
CB A:ASP10 4.3 44.8 1.0
OD1 A:ASP37 4.3 52.5 1.0
CG A:GLU13 4.4 48.9 1.0
OE2 A:GLU13 4.5 46.3 1.0
CB A:ASP37 4.5 51.9 1.0
N A:ARG11 4.5 46.2 1.0
CB A:GLU13 4.6 49.0 1.0
OD2 A:ASP10 4.7 43.4 1.0
O A:TRP9 4.8 44.5 1.0
N A:ASP10 5.0 45.1 1.0

Calcium binding site 3 out of 7 in 2qea

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Calcium binding site 3 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca162

b:92.1
occ:1.00
 OD1 A:ASP146 2.7 50.1 1.0
CG A:ASP146 3.6 47.1 1.0
CB B:ASP105 3.9 54.0 1.0
CA A:ASP146 4.0 46.0 1.0
O B:HOH191 4.2 55.5 1.0
OD2 A:ASP146 4.3 45.3 1.0
CA B:ASP105 4.3 53.5 1.0
CB A:ASP146 4.4 46.5 1.0
O A:ALA142 4.5 39.5 1.0
O A:HIS143 4.5 39.4 1.0
N A:ASP146 4.7 45.3 1.0
O B:ASP101 4.7 47.4 1.0
O B:ASP105 4.7 53.6 1.0
O A:HOH186 4.7 52.3 1.0
CA A:HIS143 4.8 38.5 1.0
C A:ASP146 5.0 47.5 1.0

Calcium binding site 4 out of 7 in 2qea

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Calcium binding site 4 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca160

b:66.0
occ:0.50
 OXT B:PHE159 3.6 44.2 1.0
C B:PHE159 4.4 44.0 1.0
O B:PHE159 4.5 44.0 1.0

Calcium binding site 5 out of 7 in 2qea

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Calcium binding site 5 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca160

b:90.3
occ:1.00
 OE1 C:GLU13 2.4 55.4 1.0
O C:ASP10 2.6 50.3 1.0
O C:HOH204 2.6 51.8 1.0
OD1 C:ASP10 2.7 55.9 1.0
O C:HOH200 3.2 47.6 1.0
OD2 C:ASP37 3.4 60.8 1.0
C C:ASP10 3.6 49.7 1.0
CD C:GLU13 3.6 53.7 1.0
CG C:ASP10 3.7 51.6 1.0
CA C:ASP10 3.9 49.5 1.0
CB C:GLU13 4.0 52.1 1.0
CA C:CA161 4.0 67.3 1.0
CG C:ASP37 4.1 62.8 1.0
CG C:GLU13 4.1 53.8 1.0
CB C:ASP10 4.4 49.7 1.0
OD2 C:ASP10 4.4 55.9 1.0
OD1 C:ASP37 4.6 62.6 1.0
OE2 C:GLU13 4.6 58.4 1.0
N C:ARG11 4.8 49.8 1.0
OD2 C:ASP14 4.9 60.3 1.0
O C:HOH207 4.9 54.1 1.0
CB C:ASP37 5.0 62.4 1.0
O C:HOH201 5.0 40.8 1.0

Calcium binding site 6 out of 7 in 2qea

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Calcium binding site 6 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca161

b:67.3
occ:1.00
 OD1 C:ASP37 2.6 62.6 1.0
OE1 C:GLU13 2.8 55.4 1.0
OE2 C:GLU13 3.2 58.4 1.0
CD C:GLU13 3.4 53.7 1.0
CG C:ASP37 3.4 62.8 1.0
OD2 C:ASP37 3.6 60.8 1.0
CA C:CA160 4.0 90.3 1.0
CB C:ASP37 4.8 62.4 1.0
CG C:GLU13 4.9 53.8 1.0
N C:ASP37 5.0 62.2 1.0

Calcium binding site 7 out of 7 in 2qea

Go back to Calcium Binding Sites List in 2qea
Calcium binding site 7 out of 7 in the Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Putative General Stress Protein 26 (JANN_0955) From Jannaschia Sp. CCS1 at 2.46 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca162

b:57.5
occ:0.50
 OD2 C:ASP146 2.4 52.1 1.0
CG C:ASP146 3.6 51.3 1.0
O C:HIS143 3.9 43.9 1.0
OD1 C:ASP146 4.2 55.6 1.0
CB C:ASP146 4.7 48.8 1.0
N C:ASP146 4.8 47.0 1.0
C C:HIS143 4.8 43.6 1.0
CA C:ASP146 4.8 48.1 1.0
O C:ALA142 4.9 43.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Fri Jul 12 15:26:20 2024

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