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Calcium in PDB 2qlt: Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae

Protein crystallography data

The structure of Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae, PDB code: 2qlt was solved by K.Tan, E.Evdokimova, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.93 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.636, 55.578, 97.748, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 19.5

Other elements in 2qlt:

The structure of Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Mercury (Hg) 6 atoms
Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae (pdb code 2qlt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae, PDB code: 2qlt:

Calcium binding site 1 out of 1 in 2qlt

Go back to Calcium Binding Sites List in 2qlt
Calcium binding site 1 out of 1 in the Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P, From Saccharomyces Cerevisiae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca278

b:15.4
occ:0.80
OD1 A:ASP200 2.2 19.0 1.0
O1 A:SO4280 2.3 19.2 0.8
OD2 A:ASP39 2.3 25.1 1.0
O A:ASP41 2.4 21.1 1.0
O A:HOH500 2.4 16.6 1.0
O A:HOH501 2.5 20.1 1.0
OD1 A:ASP39 2.7 23.4 1.0
CG A:ASP39 2.9 22.3 1.0
CG A:ASP200 3.3 20.0 1.0
C A:ASP41 3.5 20.2 1.0
S A:SO4280 3.6 17.7 0.8
OD2 A:ASP200 3.6 18.7 1.0
OE1 A:GLU199 3.7 19.2 1.0
O2 A:SO4280 4.0 16.5 0.8
O3 A:SO4280 4.1 16.6 0.8
CB A:ALA201 4.3 20.5 1.0
CA A:ASP41 4.3 20.3 1.0
CB A:ASP39 4.3 19.4 1.0
N A:ASP41 4.3 19.3 1.0
CA A:GLY76 4.4 15.5 1.0
OG1 A:THR43 4.5 20.9 1.0
CB A:ASP41 4.6 21.1 1.0
N A:GLY42 4.6 17.9 1.0
CB A:ASP200 4.6 17.9 1.0
CD A:GLU199 4.6 17.5 1.0
N A:GLY76 4.6 16.2 1.0
N A:ASP200 4.7 17.1 1.0
N A:ALA201 4.7 18.8 1.0
O4 A:SO4280 4.7 18.6 0.8
OE2 A:GLU199 4.8 18.7 1.0
CA A:GLY42 4.8 18.4 1.0
N A:VAL40 5.0 19.1 1.0
C A:VAL40 5.0 19.4 1.0

Reference:

K.Tan, E.Evdokimova, M.Kudritska, A.Savchenko, A.Edwards, A.Joachimiak. The Crystal Structure of An Isoform of Dl-Glycerol-3-Phosphatase, RHR2P From Saccharomyces Cerevisiae. To Be Published.
Page generated: Sat Dec 12 03:51:02 2020

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