Atomistry » Calcium » PDB 2q97-2qwc » 2qng
Atomistry »
  Calcium »
    PDB 2q97-2qwc »
      2qng »

Calcium in PDB 2qng: Crystal Structure of Unknown Function Protein SAV2460

Protein crystallography data

The structure of Crystal Structure of Unknown Function Protein SAV2460, PDB code: 2qng was solved by C.Chang, X.Xu, H.Zheng, A.Savchenko, A.M.Edwards, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.09 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 43.231, 40.701, 49.436, 90.00, 96.66, 90.00
R / Rfree (%) 16.5 / 18.6

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Unknown Function Protein SAV2460 (pdb code 2qng). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Unknown Function Protein SAV2460, PDB code: 2qng:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2qng

Go back to Calcium Binding Sites List in 2qng
Calcium binding site 1 out of 2 in the Crystal Structure of Unknown Function Protein SAV2460


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Unknown Function Protein SAV2460 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca201

b:7.8
occ:1.00
O A:GLY71 2.3 8.1 1.0
O A:HOH208 2.4 9.1 1.0
O A:TRP17 2.4 8.6 1.0
O A:GLY69 2.4 8.3 1.0
O A:HOH204 2.4 9.1 1.0
OD2 A:ASP75 2.4 8.7 1.0
OD1 A:ASP75 2.5 8.6 1.0
CG A:ASP75 2.8 6.9 1.0
C A:GLY69 3.4 8.4 1.0
C A:GLY71 3.6 7.3 1.0
C A:TRP17 3.6 8.3 1.0
CA A:GLY69 4.0 8.6 1.0
N A:GLY71 4.0 7.5 1.0
N A:TRP17 4.1 7.4 1.0
O A:GLY73 4.2 10.0 1.0
CA A:GLY71 4.3 8.3 1.0
O A:HOH327 4.3 26.5 1.0
CB A:ASP75 4.3 8.0 1.0
OD1 A:ASP18 4.4 12.9 1.0
C A:LYS70 4.4 8.7 1.0
N A:ASP18 4.5 9.3 1.0
O A:HOH268 4.5 17.6 1.0
N A:LYS70 4.5 8.1 1.0
CA A:TRP17 4.5 8.5 1.0
CA A:ASP18 4.5 9.6 1.0
N A:PHE72 4.6 8.4 1.0
O A:HOH252 4.7 20.4 1.0
CA A:LYS70 4.8 8.3 1.0
CA A:PHE72 4.8 8.6 1.0
CB A:LYS16 4.9 9.4 0.5
O A:HOH232 4.9 19.2 1.0
C A:PHE72 5.0 9.1 1.0

Calcium binding site 2 out of 2 in 2qng

Go back to Calcium Binding Sites List in 2qng
Calcium binding site 2 out of 2 in the Crystal Structure of Unknown Function Protein SAV2460


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Unknown Function Protein SAV2460 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca202

b:10.2
occ:1.00
OE2 A:GLU76 2.2 7.6 0.5
OD1 A:ASP30 2.2 12.6 1.0
OD1 A:ASP28 2.3 11.3 1.0
O A:LEU29 2.3 8.9 1.0
O A:SER66 2.3 11.6 1.0
O A:HOH217 2.3 15.5 1.0
OE1 A:GLU76 2.6 10.3 0.5
CD A:GLU76 3.2 7.9 0.5
C A:LEU29 3.3 8.0 1.0
CG A:ASP30 3.4 9.7 1.0
C A:SER66 3.4 11.0 1.0
CG A:ASP28 3.5 11.0 1.0
O A:HOH245 3.6 16.4 1.0
CD A:GLU76 3.6 9.5 0.5
OE1 A:GLU76 3.8 8.5 0.5
OE2 A:GLU76 3.8 9.8 0.5
CA A:ASP30 3.9 7.6 1.0
N A:SER66 4.0 9.8 1.0
N A:ASP30 4.0 8.1 1.0
O A:HOH231 4.1 18.3 1.0
OD2 A:ASP28 4.1 12.6 1.0
N A:LEU29 4.1 8.6 1.0
CH2 A:TRP17 4.3 8.0 1.0
CG A:GLU76 4.3 10.1 0.5
N A:LYS67 4.3 11.0 1.0
CB A:ASP30 4.3 9.9 1.0
CA A:LYS67 4.3 12.0 1.0
OD2 A:ASP30 4.3 14.6 1.0
CA A:SER66 4.4 10.2 1.0
CA A:LEU29 4.4 8.4 1.0
C A:ASP28 4.5 9.4 1.0
OD2 A:ASP65 4.6 20.4 1.0
CZ2 A:TRP17 4.6 9.2 1.0
CB A:ASP28 4.7 10.5 1.0
CA A:ASP28 4.7 9.7 1.0
CB A:ASP65 4.7 14.5 1.0
CG A:LYS67 4.8 19.3 1.0

Reference:

C.Chang, X.Xu, H.Zheng, A.Savchenko, A.M.Edwards, A.Joachimiak. Crystal Structure of SAV2460. To Be Published.
Page generated: Sat Dec 12 03:51:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy