Atomistry » Calcium » PDB 2q97-2qwc » 2qqp
Atomistry »
  Calcium »
    PDB 2q97-2qwc »
      2qqp »

Calcium in PDB 2qqp: Crystal Structure of Authentic Providence Virus

Protein crystallography data

The structure of Crystal Structure of Authentic Providence Virus, PDB code: 2qqp was solved by J.A.Speir, D.J.Taylor, J.E.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.42 / 3.80
Space group C 1 2 1 4
Cell size a, b, c (Å), α, β, γ (°) 659.790, 434.070, 415.850, 90.00, 126.13, 90.00
R / Rfree (%) 28.5 / n/a

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Authentic Providence Virus (pdb code 2qqp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Authentic Providence Virus, PDB code: 2qqp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2qqp

Go back to Calcium Binding Sites List in 2qqp
Calcium binding site 1 out of 2 in the Crystal Structure of Authentic Providence Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Authentic Providence Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca557

b:44.8
occ:1.00
OE1 C:GLU451 2.6 17.9 1.0
OE1 E:GLU451 2.7 20.7 1.0
OE2 E:GLU451 2.8 22.3 1.0
OE2 A:GLU451 2.9 24.7 1.0
OE1 A:GLU451 3.0 23.4 1.0
CD E:GLU451 3.2 23.3 1.0
OE2 C:GLU451 3.2 16.5 1.0
CD C:GLU451 3.3 18.7 1.0
CD A:GLU451 3.3 24.4 1.0
OE2 C:GLU456 4.2 38.3 1.0
ND2 A:ASN486 4.5 25.0 1.0
CG E:GLU451 4.7 23.1 1.0
CG C:GLU451 4.7 19.0 1.0
ND2 E:ASN486 4.8 28.2 1.0
ND2 C:ASN447 4.8 25.5 1.0
CG A:GLU451 4.8 22.9 1.0
OD1 C:ASN447 4.8 25.2 1.0
OD1 C:ASN486 4.9 20.1 1.0

Calcium binding site 2 out of 2 in 2qqp

Go back to Calcium Binding Sites List in 2qqp
Calcium binding site 2 out of 2 in the Crystal Structure of Authentic Providence Virus


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Authentic Providence Virus within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca557

b:73.4
occ:1.00
OE1 G:GLU451 3.0 30.8 1.0
OE2 G:GLU451 3.3 30.8 1.0
CD G:GLU451 3.3 30.1 1.0
CG G:GLU451 4.5 27.6 1.0
ND2 G:ASN486 4.9 24.5 1.0

Reference:

J.A.Speir, D.J.Taylor, P.Natarajan, F.M.Pringle, L.A.Ball, J.E.Johnson. Evolution in Action: N and C Termini of Subunits in Related T = 4 Viruses Exchange Roles As Molecular Switches. Structure V. 18 700 2010.
ISSN: ISSN 0969-2126
PubMed: 20541507
DOI: 10.1016/J.STR.2010.03.010
Page generated: Sat Dec 12 03:51:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy