Atomistry » Calcium » PDB 2qwd-2rex » 2raq
Atomistry »
  Calcium »
    PDB 2qwd-2rex »
      2raq »

Calcium in PDB 2raq: Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205

Protein crystallography data

The structure of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205, PDB code: 2raq was solved by F.Forouhar, M.Su, X.Xu, J.Seetharaman, L.Mao, R.Xiao, L.-C.Ma, K.Conover, M.C.Baran, T.B.Acton, G.T.Montelione, C.H.Arrowsmith, J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.58 / 3.11
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 113.569, 113.569, 114.530, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 28

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 (pdb code 2raq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 14 binding sites of Calcium where determined in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205, PDB code: 2raq:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 1 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca98

b:46.8
occ:1.00
OD2 A:ASP45 2.6 59.9 1.0
OE2 A:GLU43 3.1 56.7 1.0
CD A:GLU43 3.2 53.2 1.0
OE1 A:GLU43 3.4 55.9 1.0
CG A:ASP45 3.8 58.2 1.0
CG A:GLU43 3.9 50.5 1.0
OD1 A:ASP45 4.3 60.3 1.0
CB A:ASP45 5.0 56.5 1.0

Calcium binding site 2 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 2 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca99

b:48.6
occ:1.00
OG A:SER78 2.7 43.1 1.0
OD1 A:ASP12 2.7 47.5 1.0
CG A:ASP12 3.6 45.5 1.0
CB A:SER78 3.7 43.6 1.0
OD2 A:ASP12 3.7 47.2 1.0
OD1 A:ASP80 4.2 42.2 1.0
N A:SER78 4.6 44.2 1.0
CB A:HIS77 4.7 46.4 1.0
CA A:SER78 4.7 43.8 1.0
CB A:ASP12 4.9 43.9 1.0
C A:HIS77 4.9 45.2 1.0
CG2 G:ILE44 5.0 61.2 1.0

Calcium binding site 3 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 3 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca100

b:75.0
occ:1.00
OE2 A:GLU91 2.3 57.7 1.0
O B:THR93 3.1 59.8 1.0
O A:HOH103 3.4 27.3 1.0
CD A:GLU91 3.5 57.6 1.0
CB A:GLU91 3.9 57.1 1.0
OE1 A:GLU81 4.0 48.7 1.0
C B:THR93 4.1 58.9 1.0
OG1 B:THR93 4.2 58.7 1.0
OE1 A:GLU91 4.2 56.7 1.0
CG A:GLU91 4.3 58.1 1.0
CG2 G:THR40 4.5 39.7 1.0
N B:THR94 4.8 59.7 1.0
CA B:THR94 4.8 60.3 1.0
O A:GLU91 5.0 58.1 1.0

Calcium binding site 4 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 4 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:70.0
occ:1.00
OE2 G:GLU91 2.6 66.5 1.0
O A:THR93 2.7 63.8 1.0
CD G:GLU91 3.7 63.4 1.0
CB G:GLU91 3.8 60.6 1.0
C A:THR93 3.9 63.8 1.0
CG G:GLU91 4.3 61.4 1.0
CA A:THR94 4.5 65.0 1.0
OE1 G:GLU81 4.6 51.9 1.0
N A:THR94 4.7 64.5 1.0
OE1 G:GLU91 4.7 64.2 1.0

Calcium binding site 5 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 5 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca98

b:37.9
occ:1.00
OD1 B:ASP12 2.6 49.0 1.0
OG B:SER78 2.7 47.8 1.0
CG B:ASP12 3.4 48.1 1.0
OD2 B:ASP12 3.4 49.1 1.0
CB B:SER78 3.8 49.1 1.0
OD1 B:ASP80 4.1 51.4 1.0
OD2 B:ASP80 4.4 52.3 1.0
N B:SER78 4.7 49.8 1.0
CG B:ASP80 4.7 51.3 1.0
CA B:SER78 4.8 49.2 1.0
CB B:ASP12 4.8 46.0 1.0
CB B:HIS77 4.9 51.7 1.0

Calcium binding site 6 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 6 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca99

b:48.2
occ:1.00
OD2 B:ASP45 2.3 67.9 1.0
OE2 B:GLU43 2.8 58.4 1.0
CD B:GLU43 2.9 55.9 1.0
OE1 B:GLU43 3.0 55.2 1.0
CG B:ASP45 3.5 65.1 1.0
CG B:GLU43 3.7 55.3 1.0
OD1 B:ASP45 4.1 67.0 1.0
CB B:ASP45 4.7 62.6 1.0

Calcium binding site 7 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 7 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca100

b:70.8
occ:1.00
OE2 B:GLU91 2.3 57.3 1.0
O C:THR93 2.8 56.7 1.0
CD B:GLU91 3.3 54.2 1.0
C C:THR93 3.7 56.7 1.0
CG2 A:THR40 3.9 40.2 1.0
CB B:GLU91 3.9 50.1 1.0
OE1 B:GLU81 4.0 56.2 1.0
OE1 B:GLU91 4.1 56.9 1.0
CG B:GLU91 4.2 50.1 1.0
CA C:THR94 4.2 57.3 1.0
N C:THR94 4.4 57.1 1.0
CB C:THR94 4.4 57.4 1.0
CB A:THR40 4.6 40.0 1.0
OG1 C:THR93 4.7 57.6 1.0
CA C:THR93 4.7 56.8 1.0
N C:THR93 4.8 56.2 1.0
OG1 A:THR40 4.8 40.5 1.0

Calcium binding site 8 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 8 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca98

b:82.0
occ:1.00
O D:THR93 2.5 63.8 1.0
OE2 C:GLU91 2.9 63.1 1.0
C D:THR93 3.7 63.1 1.0
CB C:GLU91 3.8 53.8 1.0
CD C:GLU91 4.0 61.2 1.0
CG2 B:THR40 4.2 48.2 1.0
OE1 C:GLU81 4.2 63.0 1.0
CA D:THR94 4.3 66.3 1.0
N D:THR94 4.4 64.7 1.0
CG C:GLU91 4.5 56.8 1.0
CB D:THR94 4.5 66.6 1.0
OG1 B:THR40 4.6 48.1 1.0
CB B:THR40 4.7 47.8 1.0
N D:THR93 4.9 60.2 1.0
CA D:THR93 4.9 61.4 1.0
OG1 D:THR93 5.0 59.1 1.0

Calcium binding site 9 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 9 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca98

b:78.0
occ:1.00
OE2 D:GLU91 2.4 59.8 1.0
O E:THR93 2.5 62.6 1.0
CD D:GLU91 3.6 57.9 1.0
C E:THR93 3.7 62.9 1.0
CB D:GLU91 4.2 57.3 1.0
CA E:THR94 4.2 64.5 1.0
OE1 D:GLU81 4.3 60.9 1.0
N E:THR94 4.3 63.6 1.0
OE1 D:GLU91 4.4 56.1 1.0
CG D:GLU91 4.5 57.4 1.0
CA E:THR93 4.9 62.5 1.0
OG1 E:THR93 4.9 63.0 1.0
CB E:THR94 5.0 64.8 1.0

Calcium binding site 10 out of 14 in 2raq

Go back to Calcium Binding Sites List in 2raq
Calcium binding site 10 out of 14 in the Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. Northeast Structural Genomics Consortium Target TT205 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca98

b:53.8
occ:1.00
OD1 E:ASP12 2.6 52.0 1.0
OG E:SER78 2.9 57.2 1.0
CG E:ASP12 3.6 51.0 1.0
CB E:SER78 3.7 55.1 1.0
OD2 E:ASP12 3.9 50.9 1.0
OD1 E:ASP80 4.4 58.8 1.0
CB E:HIS77 4.5 54.7 1.0
O E:HIS77 4.6 53.9 1.0
N E:SER78 4.6 54.0 1.0
C E:HIS77 4.6 53.7 1.0
CA E:SER78 4.7 54.4 1.0
CB E:ASP12 4.9 49.8 1.0

Reference:

F.Forouhar, M.Su, X.Xu, J.Seetharaman, L.Mao, R.Xiao, L.-C.Ma, K.Conover, M.C.Baran, T.B.Acton, G.T.Montelione, C.H.Arrowsmith, J.F.Hunt, L.Tong. Crystal Structure of the MTH889 Protein From Methanothermobacter Thermautotrophicus. To Be Published.
Page generated: Fri Jul 12 15:49:47 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy