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Calcium in PDB 2rau: Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution, PDB code: 2rau was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.55 / 1.85
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 83.333, 83.333, 140.032, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 18.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution (pdb code 2rau). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution, PDB code: 2rau:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 2rau

Go back to Calcium Binding Sites List in 2rau
Calcium binding site 1 out of 3 in the Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca354

b:27.4
occ:1.00
O A:HOH430 3.1 28.3 1.0
N A:ILE217 3.3 26.6 1.0
CD A:PRO216 3.4 23.7 1.0
N A:PRO216 3.5 22.2 1.0
CB A:ILE217 3.6 23.0 1.0
C6 A:PG4358 3.7 29.2 1.0
CG A:PRO216 3.7 27.5 1.0
C A:ASN215 3.8 23.1 1.0
CA A:ASN215 3.8 26.0 1.0
CG2 A:ILE217 3.9 22.0 1.0
CA A:ILE217 3.9 23.6 1.0
C5 A:PG4358 3.9 28.7 1.0
C A:PRO216 4.2 25.3 1.0
CA A:PRO216 4.3 23.5 1.0
OD1 A:ASN215 4.5 27.6 1.0
O A:ASN214 4.6 24.5 1.0
CB A:ASN215 4.6 26.4 1.0
O A:ASN215 4.6 23.8 1.0
CB A:PRO216 4.6 24.2 1.0
O A:HOH364 4.7 11.4 1.0
O3 A:PG4358 4.9 24.6 1.0
N A:ASN215 4.9 27.0 1.0
CG1 A:ILE217 4.9 27.1 1.0

Calcium binding site 2 out of 3 in 2rau

Go back to Calcium Binding Sites List in 2rau
Calcium binding site 2 out of 3 in the Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca355

b:34.9
occ:1.00
O2 A:EDO357 2.0 18.7 1.0
OE2 A:GLU143 2.2 32.8 1.0
O A:GLY141 2.4 23.9 1.0
C2 A:EDO357 2.5 38.1 1.0
O A:HOH445 2.5 29.5 1.0
O A:HOH486 2.7 35.6 1.0
OE1 A:GLU143 2.7 36.9 1.0
CD A:GLU143 2.8 41.2 1.0
C A:GLY141 3.5 27.4 1.0
C1 A:EDO357 4.0 45.2 1.0
O A:HOH425 4.0 27.3 1.0
CG A:GLU143 4.3 35.9 1.0
CA A:GLY141 4.3 24.3 1.0
N A:GLU143 4.3 23.5 1.0
N A:GLN142 4.4 25.0 1.0
C A:GLN142 4.5 26.6 1.0
CA A:GLN142 4.5 23.3 1.0
O1 A:EDO357 4.6 54.3 1.0
O A:HOH634 4.7 54.7 1.0
O A:HOH468 4.9 32.6 1.0

Calcium binding site 3 out of 3 in 2rau

Go back to Calcium Binding Sites List in 2rau
Calcium binding site 3 out of 3 in the Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Lipase (NP_343859.1) From Sulfolobus Solfataricus at 1.85 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca356

b:29.6
occ:1.00
N A:ASP226 3.2 24.2 1.0
C A:ASN224 3.3 23.1 1.0
CA A:ASN224 3.5 25.6 1.0
N A:PRO225 3.6 23.3 1.0
CB A:ASP226 3.7 28.8 1.0
CA A:ASP226 3.8 25.9 1.0
CD A:PRO225 3.8 23.6 1.0
O A:ASN224 3.8 25.5 1.0
N A:MSE227 3.9 24.8 1.0
CB A:ASN224 4.0 26.5 1.0
C A:ASP226 4.0 24.1 1.0
CG A:MSE227 4.1 24.9 1.0
C A:PRO225 4.3 25.0 1.0
CG A:ASP226 4.5 31.6 1.0
CA A:PRO225 4.5 25.1 1.0
OD2 A:ASP226 4.5 40.2 1.0
CG A:PRO225 4.5 26.4 1.0
OD1 A:ASN224 4.6 29.0 1.0
CE A:MSE227 4.7 29.0 1.0
SE A:MSE227 4.7 25.8 0.8
N A:ASN224 4.8 24.8 1.0
CA A:MSE227 4.8 25.7 1.0
CG A:ASN224 4.8 25.0 1.0
O A:ASP226 4.9 23.5 1.0
O A:ALA223 4.9 24.0 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 03:51:59 2020

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