Calcium in PDB 2rld: Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution

The structure of Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution, PDB code: 2rld was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.64 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	57.238, 83.823, 63.923, 90.00, 97.42, 90.00
R / Rfree (%)	16.3 / 20.1

The structure of Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution (pdb code 2rld). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution, PDB code: 2rld:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca121 b:29.8 occ:1.00 O A:ASP4 2.3 20.5 1.0 OD1 A:ASP7 2.3 29.9 1.0 OD1 A:ASN8 2.5 24.1 1.0 O A:HOH157 2.5 33.3 1.0 O A:HOH165 2.5 36.4 1.0 OD2 A:ASP7 2.7 36.1 1.0 CG A:ASP7 2.9 19.9 1.0 O A:HOH196 2.9 47.0 1.0 C A:ASP4 3.5 19.4 1.0 CG A:ASN8 3.5 26.1 1.0 ND2 A:ASN8 4.0 30.8 1.0 CE A:MSE5 4.1 35.0 0.5 O A:HOH218 4.2 56.9 1.0 CA A:ASP4 4.2 18.3 1.0 O A:HOH183 4.2 39.7 1.0 CB A:ASP7 4.4 24.2 1.0 N A:MSE5 4.5 18.6 1.0 CB A:ASP4 4.5 18.3 1.0 N A:ASN8 4.5 21.8 1.0 CA A:MSE5 4.6 20.7 0.5 CA A:MSE5 4.7 23.6 0.5 CB A:ASN8 4.8 23.5 1.0 N A:ASP7 5.0 22.2 1.0

Calcium binding site 2 out of 3 in the Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca121 b:55.0 occ:1.00 OD1 C:ASP7 2.3 32.3 1.0 OD1 C:ASN8 2.4 34.9 1.0 O C:ASP4 2.5 31.6 1.0 O C:HOH190 2.6 46.9 1.0 O C:HOH200 2.6 38.8 1.0 CG C:ASP7 3.1 32.9 1.0 OD2 C:ASP7 3.3 46.6 1.0 CG C:ASN8 3.5 29.2 1.0 C C:ASP4 3.6 31.2 1.0 ND2 C:ASN8 3.9 30.9 1.0 CA C:MSE5 4.4 30.7 1.0 N C:MSE5 4.4 31.8 1.0 N C:ASN8 4.5 29.7 1.0 CB C:ASP7 4.6 31.7 1.0 CA C:ASP4 4.6 32.4 1.0 C C:MSE5 4.7 31.3 1.0 CB C:ASN8 4.7 31.0 1.0 O C:MSE5 4.8 29.9 1.0 N C:ASP7 4.9 31.7 1.0 CB C:ASP4 4.9 32.1 1.0

Calcium binding site 3 out of 3 in the Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Protein with Unknown Function From S23 Ribosomal Protein Family (BT_0352) From Bacteroides Thetaiotaomicron Vpi-5482 at 1.70 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca121 b:19.9 occ:1.00 O D:HOH169 2.3 33.6 1.0 OD1 D:ASP102 2.4 16.3 1.0 O D:HOH130 2.4 20.4 1.0 O D:HOH187 2.4 44.5 1.0 O D:HOH160 2.5 32.4 1.0 O D:HOH142 2.5 25.8 1.0 O D:HOH152 2.6 31.3 1.0 CG D:ASP102 3.4 17.3 1.0 OD2 D:ASP102 3.8 18.5 1.0 CB D:ASP102 4.8 16.5 1.0 O D:SER98 4.9 18.1 1.0 CB D:ASN101 4.9 15.2 1.0 N D:ASP102 4.9 15.2 1.0 CA D:ASP102 4.9 17.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.