Calcium in PDB 2roa: Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain
(pdb code 2roa). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain, PDB code: 2roa:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 2roa
Go back to
Calcium Binding Sites List in 2roa
Calcium binding site 1 out
of 2 in the Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca179
b:0.0
occ:1.00
|
OD2
|
A:ASP24
|
2.6
|
0.0
|
1.0
|
OE1
|
A:GLU31
|
2.6
|
0.0
|
1.0
|
HB2
|
A:ASP22
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP20
|
2.6
|
0.0
|
1.0
|
OD2
|
A:ASP22
|
2.7
|
0.0
|
1.0
|
O
|
A:CYS26
|
2.7
|
0.0
|
1.0
|
OE2
|
A:GLU31
|
2.7
|
0.0
|
1.0
|
CD
|
A:GLU31
|
2.8
|
0.0
|
1.0
|
OD1
|
A:ASP24
|
3.0
|
0.0
|
1.0
|
CG
|
A:ASP24
|
3.0
|
0.0
|
1.0
|
HA
|
A:ILE27
|
3.1
|
0.0
|
1.0
|
HA
|
A:ASP20
|
3.4
|
0.0
|
1.0
|
CB
|
A:ASP22
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASP22
|
3.5
|
0.0
|
1.0
|
H
|
A:ASP22
|
3.5
|
0.0
|
1.0
|
CG
|
A:ASP20
|
3.6
|
0.0
|
1.0
|
H
|
A:ASP24
|
3.6
|
0.0
|
1.0
|
C
|
A:CYS26
|
3.8
|
0.0
|
1.0
|
HG13
|
A:ILE27
|
4.0
|
0.0
|
1.0
|
H
|
A:THR28
|
4.0
|
0.0
|
1.0
|
H
|
A:GLY23
|
4.1
|
0.0
|
1.0
|
CG
|
A:GLU31
|
4.1
|
0.0
|
1.0
|
CA
|
A:ILE27
|
4.2
|
0.0
|
1.0
|
CA
|
A:ASP20
|
4.2
|
0.0
|
1.0
|
HB3
|
A:GLU31
|
4.2
|
0.0
|
1.0
|
HB3
|
A:ASP22
|
4.2
|
0.0
|
1.0
|
H
|
A:CYS26
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASP24
|
4.2
|
0.0
|
1.0
|
N
|
A:ASP22
|
4.2
|
0.0
|
1.0
|
HB3
|
A:ASP24
|
4.3
|
0.0
|
1.0
|
OD2
|
A:ASP20
|
4.3
|
0.0
|
1.0
|
CB
|
A:ASP20
|
4.3
|
0.0
|
1.0
|
HG2
|
A:GLU31
|
4.4
|
0.0
|
1.0
|
CA
|
A:ASP22
|
4.4
|
0.0
|
1.0
|
HG21
|
A:THR28
|
4.4
|
0.0
|
1.0
|
N
|
A:ILE27
|
4.4
|
0.0
|
1.0
|
C
|
A:ASP20
|
4.4
|
0.0
|
1.0
|
N
|
A:ASP24
|
4.5
|
0.0
|
1.0
|
HB2
|
A:ASP20
|
4.5
|
0.0
|
1.0
|
HB2
|
A:GLU31
|
4.5
|
0.0
|
1.0
|
CB
|
A:GLU31
|
4.5
|
0.0
|
1.0
|
N
|
A:GLY23
|
4.6
|
0.0
|
1.0
|
OD1
|
A:ASP22
|
4.6
|
0.0
|
1.0
|
HG21
|
A:ILE27
|
4.7
|
0.0
|
1.0
|
O
|
A:ASP20
|
4.7
|
0.0
|
1.0
|
H
|
A:GLY25
|
4.7
|
0.0
|
1.0
|
N
|
A:THR28
|
4.8
|
0.0
|
1.0
|
N
|
A:CYS26
|
4.8
|
0.0
|
1.0
|
C
|
A:ASP22
|
4.9
|
0.0
|
1.0
|
CG1
|
A:ILE27
|
4.9
|
0.0
|
1.0
|
CA
|
A:CYS26
|
4.9
|
0.0
|
1.0
|
CA
|
A:ASP24
|
4.9
|
0.0
|
1.0
|
HG3
|
A:GLU31
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 2 in 2roa
Go back to
Calcium Binding Sites List in 2roa
Calcium binding site 2 out
of 2 in the Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution Structure of Calcium Bound Soybean Calmodulin Isoform 4 N-Terminal Domain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca192
b:0.0
occ:1.00
|
HD22
|
A:ASN60
|
2.4
|
0.0
|
1.0
|
OE1
|
A:GLU67
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP56
|
2.6
|
0.0
|
1.0
|
O
|
A:THR62
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASN60
|
2.6
|
0.0
|
1.0
|
OD1
|
A:ASP58
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU67
|
2.6
|
0.0
|
1.0
|
OD2
|
A:ASP56
|
2.7
|
0.0
|
1.0
|
ND2
|
A:ASN60
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASP56
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASN60
|
2.9
|
0.0
|
1.0
|
CD
|
A:GLU67
|
2.9
|
0.0
|
1.0
|
OD2
|
A:ASP58
|
3.0
|
0.0
|
1.0
|
H
|
A:ASN60
|
3.1
|
0.0
|
1.0
|
CG
|
A:ASP58
|
3.1
|
0.0
|
1.0
|
HD21
|
A:ASN60
|
3.5
|
0.0
|
1.0
|
H
|
A:THR62
|
3.6
|
0.0
|
1.0
|
HA
|
A:ASP56
|
3.7
|
0.0
|
1.0
|
C
|
A:THR62
|
3.7
|
0.0
|
1.0
|
HA
|
A:ILE63
|
3.8
|
0.0
|
1.0
|
H
|
A:GLY59
|
4.0
|
0.0
|
1.0
|
N
|
A:ASN60
|
4.0
|
0.0
|
1.0
|
OG1
|
A:THR62
|
4.0
|
0.0
|
1.0
|
CB
|
A:ASN60
|
4.1
|
0.0
|
1.0
|
H
|
A:ASP58
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ASN60
|
4.2
|
0.0
|
1.0
|
CB
|
A:ASP56
|
4.2
|
0.0
|
1.0
|
H
|
A:GLY61
|
4.2
|
0.0
|
1.0
|
HG3
|
A:GLU64
|
4.3
|
0.0
|
1.0
|
N
|
A:THR62
|
4.3
|
0.0
|
1.0
|
H
|
A:GLU64
|
4.4
|
0.0
|
1.0
|
CA
|
A:ASP56
|
4.4
|
0.0
|
1.0
|
HG1
|
A:THR62
|
4.4
|
0.0
|
1.0
|
CG
|
A:GLU67
|
4.4
|
0.0
|
1.0
|
N
|
A:GLY59
|
4.5
|
0.0
|
1.0
|
CA
|
A:THR62
|
4.5
|
0.0
|
1.0
|
N
|
A:ILE63
|
4.6
|
0.0
|
1.0
|
CA
|
A:ASN60
|
4.6
|
0.0
|
1.0
|
CA
|
A:ILE63
|
4.6
|
0.0
|
1.0
|
CB
|
A:ASP58
|
4.6
|
0.0
|
1.0
|
HB2
|
A:ASP56
|
4.6
|
0.0
|
1.0
|
N
|
A:GLY61
|
4.8
|
0.0
|
1.0
|
HA2
|
A:GLY59
|
4.9
|
0.0
|
1.0
|
HG2
|
A:GLU67
|
4.9
|
0.0
|
1.0
|
HB3
|
A:ASP56
|
4.9
|
0.0
|
1.0
|
N
|
A:ASP58
|
4.9
|
0.0
|
1.0
|
HB2
|
A:ASN60
|
4.9
|
0.0
|
1.0
|
CB
|
A:THR62
|
4.9
|
0.0
|
1.0
|
HG3
|
A:GLU67
|
4.9
|
0.0
|
1.0
|
H
|
A:ALA57
|
5.0
|
0.0
|
1.0
|
|
Reference:
H.Ishida,
H.Huang,
A.P.Yamniuk,
Y.Takaya,
H.J.Vogel.
The Solution Structures of Two Soybean Calmodulin Isoforms Provide A Structural Basis For Their Selective Target Activation Properties J.Biol.Chem. V. 283 14619 2008.
ISSN: ISSN 0021-9258
PubMed: 18347016
DOI: 10.1074/JBC.M801398200
Page generated: Fri Jul 12 16:04:03 2024
|