Calcium in PDB 2tbv: Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications

The structure of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications, PDB code: 2tbv was solved by S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	N/A / 2.90
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	383.200, 383.200, 383.200, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / n/a

The binding sites of Calcium atom in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications (pdb code 2tbv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications, PDB code: 2tbv:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca388 b:20.0 occ:1.00 OD1 C:ASP186 2.0 20.0 1.0 OD2 C:ASP186 2.0 20.0 1.0 CG C:ASP186 2.3 20.0 1.0 OD2 A:ASP225 2.7 20.0 1.0 CB A:ASP225 2.7 20.0 1.0 OD2 C:ASP183 2.7 20.0 1.0 OD2 A:ASP153 3.0 20.0 1.0 CG A:ASP225 3.1 20.0 1.0 CB C:ASP183 3.3 20.0 1.0 CG C:ASP183 3.4 20.0 1.0 CG A:ASP153 3.8 20.0 1.0 CA A:ASP225 3.8 20.0 1.0 CB C:ASP186 3.8 20.0 1.0 N A:ASP225 3.9 20.0 1.0 N A:SER226 3.9 20.0 1.0 OD1 A:ASP153 4.0 20.0 1.0 O A:CYS223 4.1 20.0 1.0 CA A:CA389 4.2 20.0 1.0 C A:ASP225 4.3 20.0 1.0 OD1 A:ASP225 4.3 20.0 1.0 OD1 C:ASP183 4.4 20.0 1.0 OG A:SER226 4.5 20.0 1.0 NZ C:LYS232 4.6 20.0 1.0 CA C:ASP186 4.7 20.0 1.0 CA C:ASP183 4.8 20.0 1.0 CB A:ASP153 4.8 20.0 1.0 OD1 C:ASP181 4.9 20.0 1.0 C A:CYS223 4.9 20.0 1.0 N C:ASP186 5.0 20.0 1.0

Calcium binding site 2 out of 6 in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca389 b:20.0 occ:1.00 OD2 C:ASP153 2.3 20.0 1.0 CG C:ASP153 2.9 20.0 1.0 OD1 C:ASP153 3.0 20.0 1.0 OD2 B:ASP183 3.2 20.0 1.0 OD2 B:ASP186 3.2 20.0 1.0 OD2 C:ASP225 3.3 20.0 1.0 OD1 B:ASP186 3.4 20.0 1.0 CG B:ASP183 3.6 20.0 1.0 CB C:ASP225 3.6 20.0 1.0 CG B:ASP186 3.8 20.0 1.0 CB B:ASP183 3.8 20.0 1.0 CG C:ASP225 3.9 20.0 1.0 OE1 C:GLN267 4.0 20.0 1.0 CB C:ASP153 4.2 20.0 1.0 O C:CYS223 4.2 20.0 1.0 NZ B:LYS232 4.2 20.0 1.0 O C:ASP153 4.3 20.0 1.0 OD1 B:ASP183 4.4 20.0 1.0 CA C:ASP153 4.5 20.0 1.0 N C:SER226 4.5 20.0 1.0 CD1 C:TYR222 4.5 20.0 1.0 N C:ASP225 4.6 20.0 1.0 CA C:ASP225 4.7 20.0 1.0 C C:ASP153 4.9 20.0 1.0 CD C:GLN267 4.9 20.0 1.0

Calcium binding site 3 out of 6 in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca388 b:20.0 occ:1.00 OD1 A:ASP186 2.1 20.0 1.0 OD2 B:ASP225 2.2 20.0 1.0 OD2 A:ASP186 2.4 20.0 1.0 CB B:ASP225 2.5 20.0 1.0 CG A:ASP186 2.6 20.0 1.0 CG B:ASP225 2.7 20.0 1.0 OD2 B:ASP153 3.0 20.0 1.0 OD2 A:ASP183 3.1 20.0 1.0 OE1 B:GLN267 3.5 20.0 1.0 CB A:ASP183 3.6 20.0 1.0 CA B:ASP225 3.8 20.0 1.0 CG A:ASP183 3.8 20.0 1.0 OD1 B:ASP225 3.8 20.0 1.0 CG B:ASP153 3.8 20.0 1.0 N B:ASP225 4.0 20.0 1.0 CB A:ASP186 4.1 20.0 1.0 CA A:CA390 4.2 20.0 1.0 CD B:GLN267 4.2 20.0 1.0 N B:SER226 4.2 20.0 1.0 OD1 B:ASP153 4.3 20.0 1.0 C B:ASP225 4.4 20.0 1.0 O B:CYS223 4.5 20.0 1.0 NE2 B:GLN267 4.6 20.0 1.0 CB B:ASP153 4.7 20.0 1.0 CA B:ASP153 4.9 20.0 1.0 OD1 A:ASP183 4.9 20.0 1.0

Calcium binding site 4 out of 6 in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca389 b:20.0 occ:1.00 OE1 A:GLN267 2.1 20.0 1.0 CD A:GLN267 2.2 20.0 1.0 OD2 C:ASP181 2.4 20.0 1.0 NE2 A:GLN267 2.7 20.0 1.0 CG A:GLN267 3.1 20.0 1.0 OD2 A:ASP153 3.3 20.0 1.0 CG C:ASP181 3.4 20.0 1.0 OD1 C:ASP181 3.6 20.0 1.0 OD1 C:ASP186 3.9 20.0 1.0 CG C:ASP186 4.0 20.0 1.0 CA C:CA388 4.2 20.0 1.0 CB C:ASP186 4.2 20.0 1.0 CG A:ASP153 4.3 20.0 1.0 OD2 C:ASP186 4.4 20.0 1.0 CB A:GLN267 4.4 20.0 1.0 CE1 C:PHE198 4.4 20.0 1.0 CB A:ASP153 4.5 20.0 1.0 CB C:ASP181 4.6 20.0 1.0 CD A:PRO268 4.7 20.0 1.0

Calcium binding site 5 out of 6 in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca388 b:20.0 occ:1.00 OD2 B:ASP181 1.6 20.0 1.0 CG B:ASP181 2.4 20.0 1.0 OD1 B:ASP181 2.5 20.0 1.0 OE1 C:GLN267 3.1 20.0 1.0 CG B:ASP186 3.2 20.0 1.0 CB B:ASP186 3.4 20.0 1.0 OD2 B:ASP186 3.6 20.0 1.0 OD1 B:ASP186 3.6 20.0 1.0 CD C:GLN267 3.7 20.0 1.0 OD2 C:ASP153 3.8 20.0 1.0 CB B:ASP181 3.8 20.0 1.0 CB B:ASP183 4.0 20.0 1.0 NE2 C:GLN267 4.1 20.0 1.0 N B:ASP183 4.4 20.0 1.0 CB C:GLN267 4.5 20.0 1.0 CA B:ASP181 4.6 20.0 1.0 CE1 B:PHE198 4.6 20.0 1.0 CG C:GLN267 4.7 20.0 1.0 CG C:ASP153 4.7 20.0 1.0 CA B:ASP183 4.8 20.0 1.0 CA B:ASP186 4.9 20.0 1.0 O B:ASP183 5.0 20.0 1.0

Calcium binding site 6 out of 6 in the Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca390 b:20.0 occ:1.00 OD2 A:ASP181 2.0 20.0 1.0 CG A:ASP181 2.9 20.0 1.0 OD1 A:ASP181 3.2 20.0 1.0 OE1 B:GLN267 3.7 20.0 1.0 CG A:ASP186 3.7 20.0 1.0 OD2 B:ASP153 3.8 20.0 1.0 OD1 A:ASP186 3.8 20.0 1.0 CB A:ASP186 4.0 20.0 1.0 CD B:PRO268 4.0 20.0 1.0 CG B:GLN267 4.0 20.0 1.0 CB A:ASP181 4.1 20.0 1.0 CA A:CA388 4.2 20.0 1.0 OD2 A:ASP186 4.2 20.0 1.0 CE1 A:PHE198 4.2 20.0 1.0 CD B:GLN267 4.2 20.0 1.0 CB B:GLN267 4.4 20.0 1.0 CA B:GLN267 4.7 20.0 1.0 CZ A:PHE198 4.7 20.0 1.0 CG B:PRO268 4.8 20.0 1.0 CB A:ASP183 4.8 20.0 1.0 CA A:ASP181 4.8 20.0 1.0 CG B:ASP153 4.8 20.0 1.0

P.Hopper, S.C.Harrison, R.T.Sauer. Structure of Tomato Bushy Stunt Virus. V. Coat Protein Sequence Determination and Its Structural Implications J.Mol.Biol. V. 177 701 1984.
ISSN: ISSN 0022-2836
PubMed: 6481803
DOI: 10.1016/0022-2836(84)90045-7